Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_025406.1 Length=11141 Score E Sequences producing significant alignments: (Bits) Value seq133769 232 5e-57 seq176488 125 5e-25 seq90283 122 6e-24 seq283927 113 3e-21 >seq133769 Length=136818 Score = 232 bits (256), Expect = 5e-57 Identities = 941/1448 (65%), Gaps = 60/1448 (4%) Strand=Plus/Minus Query 5800 TCTTTTAGACACTGGGGTCATCCTTTCATTAATTACATCGAGGGATTAAAGAAACTGCAT 5859 || || ||||| ||||| ||||| ||| | ||||| || || | ||||||| || Sbjct 123152 TCATTCAGACATTGGGGCCATCCATTCTTGGATTACCAAGATGGCCTCCAGAAACTACAC 123093 Query 5860 GATCAAGTTACCATGCCAAAAAATATAGATAGACAATATGCAAATACATTGGCCAGTGAT 5919 |||||| ||| || | ||||| | | | ||||| | || |||| |||||| Sbjct 123092 ACACAAGTTCAAATGGAGAAGGAGATAGACACAGACTATGCTGAATCACTGGCAAGTGAT 123033 Query 5920 CTAGCGTACTTGATATTGAAGAAATATTTTGAAAACCACAAACATTGGGCAGTGGAAAAG 5979 ||||| | | || | ||| ||||| | || | | || ||| ||| || || | Sbjct 123032 CTAGCCTTCATGGTGTTGGAGAAAGAATTCCACACTCAGCGACAATGGTTTGTCGATTTG 122973 Query 5980 GACAGAGTGGGACGGCGATGTCTCATGCGAGAACATATAATGAATTCAACATGGCCTACT 6039 |||| | || | | || ||| || ||| | | ||| |||||||||||| Sbjct 122972 GACAAAATGAATCCACAGGATCCGATGACGGATCATGTGAGAAATCAAACATGGCCTACC 122913 Query 6040 CCAAAACAGATAGAAGACTTCGGAGACCATTGGCATGAATTGCCACTTTCCAAGATA-TA 6098 || | || |||| | ||||||| | |||||| | ||| || || | || Sbjct 122912 CCTCTTGAAATCCAAGAGTACGGAGACAAGTGGCATCTTCTCCCA-TTGACAGCTTGCTA 122854 Query 6099 CGAGATACCTGATTTAATAGATCCCTCTGTGATTTACTCTGACAAGAGTCATTCCATGAA 6158 | | || | || |||||||| || | ||| ||||||||||||||||||||| Sbjct 122853 CTCAGTGCCACAAACTATTGATCCCTCCGTTCTCTACAGTGACAAGAGTCATTCCATGAA 122794 Query 6159 TCGAAGTGAGATTATACAACACATATTGGAGCACCCTCTAAAGCCG---ATCCCTACAAG 6215 || | ||| || | ||| ||| | || || || || | || ||| | || Sbjct 122793 CCGTACTGATGTTCTG-AAC-CATGTGAGA-CAGTATCCGAATCGAGAAATTCCTTCCAG 122737 Query 6216 AAAAGTACTAAGAACAT-TATTGGAAAAACCAGCTACAGACTGGCCATCA-----TTCTT 6269 |||||| || |||||| | ||| | ||| || || | ||||| ||||| Sbjct 122736 AAAAGTTCTGAGAACAGCTCTTG---AGACCC-CTCAAG--TAAACATCAAAGAGTTCTT 122683 Query 6270 GAAAAGGATAGATGAAGAAGGTCTAAATGAAGAGGCTTTAGTCATAGGATTAAAAGGTAA 6329 | || ||| |||| | || || ||| | ||| |||| ||| | || || || Sbjct 122682 GGAAGAGATCAATGACAAGGGCCTCCCCAGAGAAGACTTAATCATCGGACTGAAGGGAAA 122623 Query 6330 GGAAAGAGAGCTGAAACAAGCAGGTAGATTCTTTTCATTGATGTCATGGGAGTTACGAGA 6389 || |||||| |||| ||| ||| |||| || || | ||||| ||| |||||||| | Sbjct 122622 AGAGAGAGAGGTGAAGAAAGAGGGTCGATTTTTCTCTCTCATGTCGTGGAAGTTACGACA 122563 Query 6390 GTACTTTGTCATTACCGAATATTTAATAAAACACCATTTTGTACCTCTATTTAAGGGATT 6449 ||||||||| || ||| || | |||||| | | |||||| || |||| ||| | Sbjct 122562 ATACTTTGTCTCAACAGAACATCTCATAAAAGAGTTGTATGTACCACTGTTTAGTGGACT 122503 Query 6450 AACAATGGCAGATGATATGACAGAAGTGATCAAAAAGATGCTGGAAAGAAGTCAAGGCCA 6509 |||||||| || || | ||| |||| | || || | || || || | | || Sbjct 122502 TACAATGGCGGACGACCTCACAAAAGTTACAAAGAAACTTCTCGACAGTTCTTTACATCA 122443 Query 6510 AGGAGAATTAGACTA-TCAAC-ATGTGAGCATAGCGAACCATATAGATTATGAAAAGTGG 6567 |||| | |||||| ||| | || || | |||| |||||| | ||||| |||||||| Sbjct 122442 AGGACGAACAGACTACTCATCCATTTGTG--TAGCCAACCATGTTGATTACCAAAAGTGG 122385 Query 6568 AACAATCATCAA--AGGAAAGAATCA-AATGGACCAGTTTTCCGTGTGATGGGCCAATTC 6624 |||||||||||| || | | | ||| | || ||| | || ||||| || || Sbjct 122384 AACAATCATCAACGTGGTTCGGCTAACAAT---ACTGTCTTCAGAGTCATGGGTCAGTTT 122328 Query 6625 TTGGG-CTATC-CATCTTTGATAGAGAGAACGCATGAGTTCTTTGAGAAAAGTCTTGTTT 6682 |||| ||| | | |||| | | |||||||||||||||||| ||||| |||||||| Sbjct 122327 GTGGGACTACCAGAACTTT--TCGTGAGAACGCATGAGTTCTTCGAGAACAGTCTTGT-- 122272 Query 6683 ATTACAATGG---TAGACCAGACTTGATGAAGGTAGAAAATGGTGTAGTATTGAAT---A 6736 ||| |||| ||||| || || ||| | | || || || | |||| | | Sbjct 122271 -CTACTATGGACCCAGACCGGATTTAATG--GACATGCAAGGGGATACT-TTGATTAGCA 122216 Query 6737 AAACAGATAATTTAGTTTGCTGGAATGGTCAAGCAGGGGGGTTAGAGGGACTGAGACAAA 6796 || |||| || || |||||| | || ||| ||| || | || || || ||||||| Sbjct 122215 AAGCAGACTATCCCGTATGCTGGGAAGGACAAAAAGGAGGTCTCGAAGGCCTAAGACAAA 122156 Query 6797 AAGGTTGGAGTATACTCAACTTGTTGGTGATTAGACGTGAGTCCAAAATCCGCAATACAA 6856 | || ||||| || | || | | || | || ||| | |||| ||| || || Sbjct 122155 AGGGGTGGAGCATTGTAAATCTTCTCGTACTCCTGCGAGAGGCAAAAACCCGTAACACTT 122096 Query 6857 GGGTTCAGACATTAGCACAGGGAGACAATCAAGTGATCTGTACACA-GTACAGATTAC-- 6913 ||| | |||||||| || || ||||| ||||||||||| | ||| ||| | | | Sbjct 122095 TAGTTAAAACATTAGCGCAAGGGGACAACCAAGTGATCTGCA-ACATGTATCGTCTCCCT 122037 Query 6914 -AACCTAC--TAGGA-ATGAGGATGAGCTAATTTATGCGTTAAATCAAATCAAAGATAAT 6969 || | || | ||| | || ||| || || || || || |||| | ||| Sbjct 122036 GAAACAACCATCGGAGAAGAAATCGAG-GAAAGAATTCGAGAAGTC--ATCA---AGAAT 121983 Query 6970 AATGCTGTTATAATGTCAGCCATCGAAACAGGAGTGAATAAACTAGGTCTGATCATCAAT 7029 || | | |||||| | ||| | | ||||| |||||| || || | ||||| Sbjct 121982 AACGAAGCCATAATGACTGCCGTGTCAGCAGGAACACGTAAACTGGGATTGCTAATCAAC 121923 Query 7030 AATGATGAAACAATACAAAGTGCAGATTTCCTTACATATGGGAAAGTCCCAATTTTCAGG 7089 | ||||| || || ||||| | ||||| || | ||||| || || ||| | ||||| Sbjct 121922 AGAGATGAGACCATGCAAAGCACTGATTTTCTGTCCTATGGCAAGGTACCAGTGTTCAGA 121863 Query 7090 GGTAACATAAGAGGTTTAGAGACAAAAAGGTGGTCTCGGGTGACTTGTGTCACAAATGAT 7149 || ||||| | ||||||| |||| || ||||| || || || || || || |||||| Sbjct 121862 GGAAACATCCTACCTTTAGAGGCAAAGAGATGGTCACGAGTTACATGCGTAACCAATGAT 121803 Query 7150 CAATTGCCATCTTTGGCCAATGTCTTATCTTCTGTCTCAACTAATGCGTTGACAGTCTCT 7209 ||||| || |||||| ||||||| | || | | ||||| ||||| | ||||| || Sbjct 121802 CAATTACCTTCTTTGTCCAATGTACTTTCAACCATTTCAACAAATGCTATCACAGTAGCT 121743 Query 7210 CATTACAG 7217 || |||| Sbjct 121742 CAGCACAG 121735 >seq176488 Length=2532 Score = 125 bits (138), Expect = 5e-25 Identities = 395/601 (66%), Gaps = 26/601 (4%) Strand=Plus/Minus Query 6311 TCATAGGATTAAAAGGTAAGGAAAGAGAGCTGAAACAAGC-AGGTAGATTCTTTTCATTG 6369 |||| || || ||||| ||||| ||||| | || ||| ||| | |||||| || | Sbjct 629 TCATTGGCTTGAAAGGGAAGGAGAGAGAAGTAAAGAAAGAGAGGCA-ATTCTTCTCCCTC 571 Query 6370 ATGTCATGGGAGTTACGAGAGTACTTTGTCATTACCGAATATTTAATAAAACACCATTTT 6429 ||||| ||| ||||| | | ||||||||| || ||| || | |||||| | ||| | Sbjct 570 ATGTCTTGGAAGTTAAGGCAATACTTTGTCTCAACAGAACATCTTATAAAAGA--ATTGT 513 Query 6430 --GTACCTCTATTTAAGGGATTAACAATGGCAGATGATATGACAGAAGTGATCAAAAAGA 6487 || || || || || ||| | || ||||||||||| | ||| | || | || || Sbjct 512 ACGTGCCACTGTTCAACGGACTCACGATGGCAGATGACCTCACAAAGGTTACAAAGAAAC 453 Query 6488 TGCTGGAAAGAAGTCAAGGCCAAGGAGAATTAGACTAT--CAACATGTGAGCATAGCGAA 6545 | || || || | | |||||| || || || | ||| || | | || || Sbjct 452 TTCTCGACAGTTCTTTACATCAAGGACAAACTGATTACTCCTCCATTTGTG--TGGCCAA 395 Query 6546 CCATATAGATTATGAAAAGTGGAACAATCATCAAAGGAAAGAATCAAATGGACCAGTTTT 6605 |||| | ||||| | || ||||| || |||||| | | || || || || Sbjct 394 CCATGTTGATTACCAGAAATGGAATAACCATCAACGTGGTTTGGCCAACAACCCTGTCTT 335 Query 6606 CCGTGTGATGGGCCAATTCTTGGGCTATCCAT--CTTTGATAGAGAGAACGCATGAGTTC 6663 ||| |||||||| || || |||| ||| |||| | | |||||||| |||||| Sbjct 334 CCGAGTGATGGGTCAGTTTGTGGGTCTGCCAGAACTTT--TCGTCAGAACGCACGAGTTC 277 Query 6664 TTTGAGAAAAGTCTTGTTTATTACAATGG---TAGACCAGACTTGATGAAGGTAGAAAAT 6720 || ||||| ||||| | ||||| ||| |||||| || || ||| | ||| || Sbjct 276 TTCGAGAACAGTCTCATCTATTA---TGGACCTAGACCTGATTTAATGGAAGTACAA--- 223 Query 6721 GGTGTAGTATTGAA---TAAAACAGATAATTTAGTTTGCTGGAATGGTCAAGCAGGGGGG 6777 || | |||| |||| || | || || || ||| | || || |||||| Sbjct 222 GGGGACACCTTGATCAGTAAAGCAAGTTATCCTGTCTGTTGGGAAGGCCAGAAAGGGGGT 163 Query 6778 TTAGAGGGACTGAGACAAAAAGGTTGGAGTATACTCAACTTGTTGGTGATTAGACGTGAG 6837 | ||||| ||||||||||||| |||||||| | || ||| | ||| | || || Sbjct 162 CTCGAGGGTTTGAGACAAAAAGGGTGGAGTATTGTGAATTTGCTCGTGCTCTTGCGAGAA 103 Query 6838 TCCAAAATCCGCAATACAAGGGTTCAGACATTAGCACAGGGAGACAATCAAGTGATCTGT 6897 | || | ||| ||||| || |||| |||||||||| ||||| || ||||| ||| Sbjct 102 GCTAAGACCCGAAATACCCTTGTCAAGACCCTAGCACAGGGGGACAACCAGGTGATATGT 43 Query 6898 A 6898 | Sbjct 42 A 42 >seq90283 Length=1560 Score = 122 bits (134), Expect = 6e-24 Identities = 561/876 (64%), Gaps = 23/876 (3%) Strand=Plus/Plus Query 6310 GTCATAGGATTAAAAGGTAAGGAAAGAGAGCTGAAACAAGCAGGTAGATTCTTTTCATTG 6369 |||||||| | || || |||||| | || | || | | || ||||| || || | Sbjct 236 GTCATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAGAAGGAGGGGAGATTTTTCTCCCTC 295 Query 6370 ATGTCATGGGAGTTACGAGA--GTACTTTGTCATTACCGAATATTTAATAAAACACCATT 6427 |||| |||| | ||| |||| |||||| || ||||| || | || || | | | Sbjct 296 ATGTTATGGAACTTAAGAGACAGTACTTCGTGTCGACCGAGTACCTCATCAAGGAGCTGT 355 Query 6428 TTGTACCTCTATTTAAGGGATTAACAATGGCAGATGATATGACAGAAGTGATCAAAAAGA 6487 ||| || || || |||||||||||||| || ||| |||| |||||| ||||||| Sbjct 356 ATGTTCCGCTCTTCTCTGGATTAACAATGGCGGACGATTTGACCAAAGTGACCAAAAAGT 415 Query 6488 TGCTGGAAAGAAG--TCAAGGCCAAGGAGAATTAGACTATCAAC---ATGTGAGCATAGC 6542 | ||||| | |||| |||||| | ||||| |||| || | | || Sbjct 416 TACTGGATAATTCCATCAAT--CAAGGATCAGATGACTA-CAACTCCATTTCTC--TTGC 470 Query 6543 GAACCATATAGATTATGAAAAGTGGAACAATCATCAAAGGAAAGAATCAAATGGACCAGT 6602 ||||||||||| |||||||| |||||||| || || ||| || | | || | |||| Sbjct 471 AAACCATATAGACTATGAAAAATGGAACAACCACCAGAGGGGAGCAGCTAACGATCCAGC 530 Query 6603 TTTCCGTGTGATGGGCCAATTCTTGGGCTATCCATCTTTGATAGAGAGAACGCATGAGTT 6662 ||| | || ||||| |||||| | || | | | ||| | | ||| || ||||| Sbjct 531 TTTAAGAGTCATGGGACAATTCATCGGTTTACTAGAGTTGTTTGTTCAAACACACGAGTT 590 Query 6663 CTTTGAGAAAAGTCTTGTTTATTACAATGGTAGACCAGACTTGATGAAGGTAGAAAATGG 6722 ||||| || ||||| || ||| | || ||||| ||| | ||||| ||| Sbjct 591 CTTTGGAGGCAGCCTTGTCTACTACGGACCCCGTCCTGACTTAATGGAAGTAGA---TGG 647 Query 6723 TGTAGT-ATTGAATAAAACAGATAATTTA---GTTTGCTGGAATGGTCAAGCAGGGGGGT 6778 | ||| | | || | || || || || |||||||| | || || || | Sbjct 648 AG-AGTCACTACGGAACAAAGGGAACTTCCCTGTCTGCTGGAAGAGACAGCTCGGAGGCT 706 Query 6779 TAGAGGGACTGAGACAAAAAGGTTGGAGTATACTCAACTTGTTGGTGATTAGACGTGAGT 6838 | || || || |||||||||||||||| || | || | ||||| | | || Sbjct 707 TGGAAGGTCTCCGACAAAAAGGTTGGAGCATTGTAAATCTATTGGTCCTCCCGCACGAAG 766 Query 6839 CCAAAATCCGCAATACAAGGGTTCAGACATTAGCACAGGGAGACAATCAAGTGATCTGTA 6898 |||| | | || || | |||| | || | | |||||||||| ||||| || || | Sbjct 767 CCAAGAGTAGAAACACCATGGTTAAAACCCTCGTGAAGGGAGACAACCAAGTAATATGCA 826 Query 6899 CACAGTACA-GATTACAACCTACTAGGAATGAGGATGAGCTAATTTATGCGT-TAAATCA 6956 ||||| ||| | || | | | | || ||| |||| | || | || | Sbjct 827 ACTCGTACAAGATCCCGACATCC-ACCACCCAGTCTGAACTAAAAAAAACGGATCAACGA 885 Query 6957 AATCAAAGATAATAATGCTGTTATAATGTCAGCCATCGAAACAGGAGTGAATAAACTAGG 7016 | ||| || |||| ||| || ||| || | | | ||| | ||||| || Sbjct 886 AGTCATGACCAACAATGATGTAATCATGAGGGCTGTTGCTGCTGGAACAGAAAAACTGGG 945 Query 7017 TCTGATCATCAATAATGATGAAACAATACAAAGTGCAGATTTCCTTACATATGGGAAAGT 7076 ||| |||| || |||| |||||||| | ||| | || || || | ||||| ||||| Sbjct 946 TCTCCTCATTAACCATGACGAAACAATGCGAAGCTCTGACTTTTTTTCTTATGGAAAAGT 1005 Query 7077 CCCAATTTTCAGGGGTAACATAAGAGGTTTAGAGACAAAAAGGTGGTCTCGGGTGACTTG 7136 || | | ||||||||||| | | ||| ||||||| ||||| | || || || Sbjct 1006 GCCGGTGTATAGGGGTAACATCCTCCCTCTCGAGGCAAAAAGATGGTCGAGAGTCACGTG 1065 Query 7137 TGTCACAAATGATCAATTGCCATCTTTGGCCAATGT 7172 || || ||||||||| | | |||||| |||| || Sbjct 1066 CGTGACTAATGATCAAATACAATCTTTATCCAACGT 1101 >seq283927 Length=152763 Score = 113 bits (124), Expect = 3e-21 Identities = 257/381 (67%), Gaps = 12/381 (3%) Strand=Plus/Minus Query 6311 TCATAGGATTAAAAGGTAAGGAAAGAGAGCTGAAACAAGCAGGTAGATTCTTTTCATTGA 6370 |||| ||||||||||| |||||| | || | || | | ||| |||||||| || | | Sbjct 1658 TCATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAAGGAAGATTCTTCTCCCTAA 1599 Query 6371 TGTCATGGGAGTTACGAGAGTACTTTGTCATTACCGAATATTTAATAAAACACCATTTT- 6429 |||| ||| | | | | | || || |||||||| ||| | || |||| | ||| | Sbjct 1598 TGTCCTGGAATCTTCAACAATATTTCGTCATTACAGAA-ACCTACTAAAGGA--ATTCTA 1542 Query 6430 -GTACCTCTATTTAAGGGATTAACAATGGCAGATGATATGACAGAAGTGATCAAAAAGAT 6488 |||| |||||| ||| | || |||||||| || ||| ||||| |||||| | Sbjct 1541 CATACCCCTATTTGCAGGACTCACCATGGCAGACGACTTGATGGAAGTCGCAAAAAAGTT 1482 Query 6489 GCTGGAAAGAAGTCA--AGGCCAAGGAGAATTAGACTATCAACATGTGAGCATAGCGAAC 6546 | | | | || ||| || ||||| | || || ||| | | ||| || ||| Sbjct 1481 GTT--AGACAATTCACCGGGACAAGGGCAGGACGATTACCAATTGATTACCATTGCCAAC 1424 Query 6547 CATATAGATTATGAAAAGTGGAACAATCATCAAAGGAAAGAATCAAATGGACCAGTTTTC 6606 ||||| ||||| ||||| ||||| ||||| ||||| ||| | || || || ||| Sbjct 1423 CATATCGATTACGAAAAATGGAATAATCACCAAAG---AGATGCTAACAACCCGGTGTTC 1367 Query 6607 CGTGTGATGGGCCAATTCTTGGGCTATCCATCTTTGATAGAGAGAACGCATGAGTTCTTT 6666 | |||||||| ||||||||||| ||| ||| || | || || | |||||| Sbjct 1366 AGCGTGATGGGGCAATTCTTGGGACTGCCAAACTTGTTAACTCGCACCCACAAATTCTTT 1307 Query 6667 GAGAAAAGTCTTGTTTATTAC 6687 || || ||| | |||||||| Sbjct 1306 GAAAACAGTTTAATTTATTAC 1286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35388284488240