Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_028234.1 Length=12162 Score E Sequences producing significant alignments: (Bits) Value seq283927 105 5e-19 seq292816 87.8 1e-13 >seq283927 Length=152763 Score = 105 bits (116), Expect = 5e-19 Identities = 265/392 (68%), Gaps = 12/392 (3%) Strand=Plus/Minus Query 7373 GAAGATCTCTTGATTGGATTAAAGGCCAAAGAAAGAGAACTGAAAAGGAAAGGTAGAttt 7432 || |||||| | ||||||||||| | || ||| | ||| | || | | |||| ||||| Sbjct 1668 GATGATCTCATCATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAAGGAAGATTC 1609 Query 7433 ttttCTCTAATGACTTGGAGATTGAGAGAATACTTTGTTGCAACTGAATTCCTGATTAAA 7492 || || |||||| | |||| | | |||| || || || ||| ||| | |||| Sbjct 1608 TTCTCCCTAATGTCCTGGAATCTTCAACAATATTTCGTCATTACAGAAA-CCT-ACTAAA 1551 Query 7493 AAACATTTTG--TCCCTCTATTTGAGGGACTAACTATGGCAGATGATTTGATCACAGTTG 7550 | ||| | | || ||||||| ||||| || |||||||| || ||||| ||| | Sbjct 1550 GGA-ATTCTACATACCCCTATTTGCAGGACTCACCATGGCAGACGACTTGATGGAAGTCG 1492 Query 7551 TGaaaaaaaTGATTCGA-AACTCAAATGGACAAGGATTAAATGATTAC-AGTAGAATAAC 7608 ||||| || || || || ||| |||||||| | |||||| | | || || | Sbjct 1491 CAAAAAAGTTG-TTAGACAATTCACCGGGACAAGGGCAGGACGATTACCAATTGATTACC 1433 Query 7609 TATAGCAAATCATATTGATTATGAAAAGTGGAATAATCATCAAAGAAAGGAATCAAATAA 7668 || || || ||||| ||||| ||||| ||||||||||| |||||| || | || || Sbjct 1432 -ATTGCCAACCATATCGATTACGAAAAATGGAATAATCACCAAAGA---GATGCTAACAA 1377 Query 7669 ATATGTTTTTAAAGTTATGGGGCAATTCTTAGGTTATCCTAATTTAATTGTCAGAACCCA 7728 || || | || |||||||||||||| || || || || | | ||||| Sbjct 1376 CCCGGTGTTCAGCGTGATGGGGCAATTCTTGGGACTGCCAAACTTGTTAACTCGCACCCA 1317 Query 7729 TGAGTTTTTTGAAAAAAGTGTCATATACTACG 7760 | || |||||||| ||| | || || |||| Sbjct 1316 CAAATTCTTTGAAAACAGTTTAATTTATTACG 1285 >seq292816 Length=4775 Score = 87.8 bits (96), Expect = 1e-13 Identities = 248/374 (66%), Gaps = 14/374 (4%) Strand=Plus/Minus Query 7374 AAGATCTCTTG---ATTGGATTAAAGGCCAAAGAAAGAGAACTGAAAAGGAAAGGTAGAt 7430 ||||| |||| |||||| | |||| ||||| |||||| |||||| | |||| |||| Sbjct 1767 AAGATGACTTGGTAATTGGACTGAAGGGTAAAGAGAGAGAAGTGAAAAAGGAAGGCAGAT 1708 Query 7431 tttttt-CTCTAATGACTTGGAGATTGAGAGAATACTTTGTTGCAACTGAATTCCTGATT 7489 |||||| | || ||| | |||| | | | | || || ||||||| ||| || Sbjct 1707 TTTTTTTCACTCATGTCATGGAATCTCCGTCAGTGTTTCGTGACAACTGAGCACCTTATA 1648 Query 7490 AAAAAACATTTTGTCCCTCTATTTGAGGGACTAACTATGGCAGATGATTTGATCACAGTT 7549 || || ||| ||| ||||| ||| ||| | ||||||||||| ||| | | || |||| Sbjct 1647 AAGGAATATTATGTTCCTCTTTTTTCTGGATTGACTATGGCAGACGATCTCACCAAAGTT 1588 Query 7550 GT-Gaaa------aaaaTGATTCGA-AACTCAAATGGACAAGGATTAAATGATTACAGTA 7601 | |||| |||| | | | | ||||| || ||||| || || Sbjct 1587 ATAGAAAGTTACGAAAAAGTTGCTAGAACTCTGCCGGTCAAGGCCAGGTCGACTATTCAT 1528 Query 7602 GAATAACTATAGCAAATCATATTGATTATGAAAAGTGGAATAATCATCAAAGAAAGGAAT 7661 ||| || || | || ||| | || || ||||||||||||| |||||| | ||| Sbjct 1527 CAATCACCTTACCCAACCATGTAGACTACAAAAAGTGGAATAACCATCAACGTGCCGAAG 1468 Query 7662 CAAATAAATATGTTTTTAAAGTTATGGGGCAA-TTCTTAGGTTATCCTAATTTAATTGTC 7720 | || | | |||| |||| ||||| ||| |||| | ||||| || | ||| | Sbjct 1467 CCAACTATCCCGCTTTTCAAGTAATGGGACAATTTCTGGGACTATCCGAA-GTGTTTGAC 1409 Query 7721 AGAACCCATGAGTT 7734 ||||| |||||||| Sbjct 1408 AGAACTCATGAGTT 1395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 38641903440288