Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_028235.1 Length=12994 Score E Sequences producing significant alignments: (Bits) Value seq283927 118 9e-23 >seq283927 Length=152763 Score = 118 bits (130), Expect = 9e-23 Identities = 333/508 (66%), Gaps = 19/508 (4%) Strand=Plus/Minus Query 8225 TCTAATTATTGGGTTAAAAGCCAAAGAAAGAGAAATGAAGA--GAATTGGGAGAtttttt 8282 ||| || ||||| ||||||| || ||| | ||||| |||| ||| || ||||| || Sbjct 1663 TCTCATCATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAA--GGAAGATTCTTC 1606 Query 8283 tCATTAATGTCTTGGGAGTTGAGAGAATATTTTGTATATACAGAGTATTTAATAAAGGAG 8342 || ||||||| ||| | | | ||||||| || |||||| | || ||||||| Sbjct 1605 TCCCTAATGTCCTGGAATCTTCAACAATATTTCGTCATTACAGAA-ACCTACTAAAGGAA 1547 Query 8343 TATTTTGTTCCATTATTCCATGGCTTGACCATGGCAGATGACCTGCAGGAAGTTATTAAG 8402 | | | || |||| || | ||||||||||| ||| || |||||| || Sbjct 1546 TTCTACATACCCCTATTTGCAGGACTCACCATGGCAGACGACTTGATGGAAGTCGCAAAA 1487 Query 8403 AAAATGTTGGAGAATGTAAGTGGACAAGGGTTGGATAATTACGAGTATATATCAATTGCG 8462 || |||| || ||| | ||||||||| ||| ||||| | | || | ||||| Sbjct 1486 AAGTTGTTAGACAATTCACCGGGACAAGGGCAGGACGATTACCAATTGATTACCATTGCC 1427 Query 8463 AATCATATTGATTATGAAAAATGGAACAATCATCAACGATACGAATCTAATTGTCATATT 8522 || ||||| ||||| ||||||||||| ||||| ||| || || |||| | | Sbjct 1426 AACCATATCGATTACGAAAAATGGAATAATCACCAAAGA---GATGCTAACAACCCGGTG 1370 Query 8523 TTTAAAGTTATGGGTCAATGTTTTGGTCTTCCCAATTTGTTTTTACGTTCTCATGAATTT 8582 || | || ||||| |||| || || || || || ||||| || | || |||| Sbjct 1369 TTCAGCGTGATGGGGCAATTCTTGGGACTGCCAAACTTGTTAACTCGCACCCACAAATTC 1310 Query 8583 TTTCAAAAAAGCCTGATTTATTACAACCAACGACCTGATCTGATGATCCCCTTAGAAGAC 8642 ||| |||| || | ||||||||| | ||| || || |||||| || | |||| Sbjct 1309 TTTGAAAACAGTTTAATTTATTACGGACCACGTCCGGACCTGATGGAGGCCAAGGGAGAC 1250 Query 8643 AGGCTGGAATCTATTGATCCCAGTCAACT----TGTTTGTTGGAATGGTCAAGCTGGAGG 8698 | ||| || || || || | ||| |||||| |||||||| || || || Sbjct 1249 ACGCTAGA-------GAACCGAGGCCACTTCCCTGTTTGCTGGAATGGCCAGTTGGGTGG 1197 Query 8699 ATTGGAAGGATTGAGGCAAAAGGGTTGG 8726 | |||| || | | || ||||| ||| Sbjct 1196 ACTGGAGGGTCTCCGTCAGAAGGGGTGG 1169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41293236415904