Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_028236.1 Length=11072 Score E Sequences producing significant alignments: (Bits) Value seq283927 113 3e-21 seq49187 113 3e-21 seq292816 102 6e-18 seq176488 89.7 4e-14 >seq283927 Length=152763 Score = 113 bits (124), Expect = 3e-21 Identities = 262/390 (67%), Gaps = 10/390 (3%) Strand=Plus/Minus Query 6215 GATGATCTGATCATCGGATTAAAGGGTAAGGAGAGAGAAGTCAAAGTAAAAGGAAGATTC 6274 |||||||| ||||| |||||||| || ||||| | ||| |||| ||||||||||| Sbjct 1668 GATGATCTCATCATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAAGGAAGATTC 1609 Query 6275 TTTTCCCTGATGTCTTGGAAGCTGAGAGAGTATTTCGTGGTGACGGAGTACTTGATAAAG 6334 || ||||| ||||| ||||| || | | |||||||| | || || || | ||||| Sbjct 1608 TTCTCCCTAATGTCCTGGAATCTTCAACAATATTTCGTCATTACAGA-AACCTACTAAAG 1550 Query 6335 GAGCATTACGTTCCTTTATTTAATGGGCTGACAATGGCTGATGACATGACAACAGTTATA 6394 || ||| | || ||||| || || || ||||| || ||| ||| ||| | Sbjct 1549 GAATTCTACATACCCCTATTTGCAGGACTCACCATGGCAGACGACTTGATGGAAGTCGCA 1490 Query 6395 TCCAAGCTGATGGATAGAACGCAGGGGCAAGGAGGGAGTGATTATTCTCAA---ATCTGT 6451 ||| || | || | | | ||| |||| || || || ||| ||| || Sbjct 1489 AAAAAGTTGTTAGACAATTCACCGGGACAAG--GGCAG-GACGATTACCAATTGATTACC 1433 Query 6452 ATTGCAAATCATATAGATTATGAGAAGTGGAACAATCACCAAAGAAAGGATGCCACTGGT 6511 ||||| || ||||| ||||| || || ||||| |||||||||||| ||||| | Sbjct 1432 ATTGCCAACCATATCGATTACGAAAAATGGAATAATCACCAAAGA---GATGCTAACAAC 1376 Query 6512 CCAGTTTTCAAAGTCATGGGTCAGTTTTTGGGGTATCCCAATTTAATATACCGGACACAT 6571 || || |||| || ||||| || || ||||| || || || || || || || Sbjct 1375 CCGGTGTTCAGCGTGATGGGGCAATTCTTGGGACTGCCAAACTTGTTAACTCGCACCCAC 1316 Query 6572 GAATTCTTTGAAAATAGCTGGATATACTAC 6601 ||||||||||||| || | || || ||| Sbjct 1315 AAATTCTTTGAAAACAGTTTAATTTATTAC 1286 >seq49187 Length=20191 Score = 113 bits (124), Expect = 3e-21 Identities = 231/338 (68%), Gaps = 4/338 (1%) Strand=Plus/Plus Query 6202 TGGACTCCCTTCCGATGATCTGATCATCGGATTAAAGGGTAAGGAGAGAGAAGTCAAAGT 6261 ||||||| | ||||| ||||| ||||| | || | ||||| |||||||| |||| Sbjct 6333 TGGACTCACAAGAGATGACCTGATAATCGGGCTCAAAGTAAAGGAAAGAGAAGT-AAAGA 6391 Query 6262 AAAAGGAA-GATTCTTTTCCCTGATGTCTTGGAAGCTGAGAGAGTATTTCGTGGTGACGG 6320 || ||||| ||||||| || || ||||| ||||| ||||| | || | ||| || | Sbjct 6392 AAGAGGAAAGATTCTTCTCGCTCATGTCGTGGAATCTGAGGCAATACTCCGTCACAACAG 6451 Query 6321 AGTACTTGATAAAGGAGCATTACGTTCCTTTATTTAATGGGCTGACAATGGCTGATGACA 6380 || |||| ||||||||| || || || | || || |||| ||||||||||| Sbjct 6452 AGCACTTAATAAAGGAGTTCTATGTGCCCCTTTTCTCGGGATTGACTATGGCTGATGATC 6511 Query 6381 TGACAACAGTTATATCCAAGCTGATGGATAGAACGCAGGGGCAAGGAGGGAGTGATTAT- 6439 |||| | || | | || || | ||||| || ||||| || | | ||| Sbjct 6512 TGACTAAGGTGACAAAGAAACTCCTAGATAGTTCGATCAACCAAGGGCAGAATTACTATA 6571 Query 6440 TCTCAAATCTGTATTGCAAATCATATAGATTATGAGAAGTGGAACAATCACCAAAGAAAG 6499 ||| || | | | |||||||| |||||||||| || ||||| || || || | | Sbjct 6572 ACTC-CATTTCTCTGGCAAATCACGTAGATTATGAAAAATGGAATAACCATCAGCGGGGG 6630 Query 6500 GATGCCACTGGTCCAGTTTTCAAAGTCATGGGTCAGTT 6537 || || | | |||| || ||| ||| ||||||||||| Sbjct 6631 GAGGCGAATAGTCCTGTGTTCCGAGTAATGGGTCAGTT 6668 >seq292816 Length=4775 Score = 102 bits (112), Expect = 6e-18 Identities = 132/181 (73%), Gaps = 1/181 (1%) Strand=Plus/Minus Query 6215 GATGATCTGATCATCGGATTAAAGGGTAAGGAGAGAGAAGTCAAAGTAAAAGGAAGA-TT 6273 ||||| || | || ||| | |||||||| ||||||||||| ||| |||| ||| || Sbjct 1765 GATGACTTGGTAATTGGACTGAAGGGTAAAGAGAGAGAAGTGAAAAAGGAAGGCAGATTT 1706 Query 6274 CTTTTCCCTGATGTCTTGGAAGCTGAGAGAGTATTTCGTGGTGACGGAGTACTTGATAAA 6333 ||||| || ||||| ||||| || | ||| ||||||| || ||| || | ||||| Sbjct 1705 TTTTTCACTCATGTCATGGAATCTCCGTCAGTGTTTCGTGACAACTGAGCACCTTATAAA 1646 Query 6334 GGAGCATTACGTTCCTTTATTTAATGGGCTGACAATGGCTGATGACATGACAACAGTTAT 6393 ||| |||| |||||| | ||| ||| |||| ||||| || || | || | |||||| Sbjct 1645 GGAATATTATGTTCCTCTTTTTTCTGGATTGACTATGGCAGACGATCTCACCAAAGTTAT 1586 Query 6394 A 6394 | Sbjct 1585 A 1585 >seq176488 Length=2532 Score = 89.7 bits (98), Expect = 4e-14 Identities = 387/599 (65%), Gaps = 20/599 (3%) Strand=Plus/Minus Query 6222 TGATCATCGGATTAAAGGGTAAGGAGAGAGAAGTCAAAGTAAAAG-GAAGATTCTTTTCC 6280 ||||||| || || || || |||||||||||||| |||| || || | |||||| ||| Sbjct 632 TGATCATTGGCTTGAAAGGGAAGGAGAGAGAAGT-AAAGAAAGAGAGGCAATTCTTCTCC 574 Query 6281 CTGATGTCTTGGAAGCTGAGAGAGTATTTCGTGGTGACGGAGTACTTGATAAAGGAGCAT 6340 || |||||||||||| | || | || || || || || | | ||||| || Sbjct 573 CTCATGTCTTGGAAGTTAAGGCAATACTTTGTCTCAACAGAACATCTTATAAAAGAATTG 514 Query 6341 TACGTTCCTTTATTTAATGGGCTGACAATGGCTGATGACATGACAACAGTTATATCCAAG 6400 ||||| || | || || || || || ||||| |||||| | |||| |||| | || Sbjct 513 TACGTGCCACTGTTCAACGGACTCACGATGGCAGATGACCTCACAAAGGTTACAAAGAAA 454 Query 6401 CTGATGGATAGAACGCAGGGGCAAGGAGGGAGTGATTATTCTCAAATCTGTATTGCAAAT 6460 || | || || | |||||| | |||||| || || ||| | || || Sbjct 453 CTTCTCGACAGTTCTTTACATCAAGGACAAACTGATTACTCCTCCATTTGTGTGGCCAAC 394 Query 6461 CATATAGATTATGAGAAGTGGAACAATCACCAAAGAAAGGAT--GCCACTGGTCCAGTTT 6518 ||| | ||||| |||| ||||| || || ||| | || | |||| || || | Sbjct 393 CATGTTGATTACCAGAAATGGAATAACCATCAACG--TGGTTTGGCCAACAACCCTGTCT 336 Query 6519 TCAAAGTCATGGGTCAGTTTTTGGGGTATCCCA-ATTTAATATACCGGACACATGAATTC 6577 || ||| |||||||||||| | |||| | ||| | | | | | || || || ||| Sbjct 335 TCCGAGTGATGGGTCAGTTTGT-GGGTCTGCCAGAACTTTTCGTCAGAACGCACGAGTTC 277 Query 6578 TTTGAAAATAGCTGGATATACTACAATGGGAGACCT-GACCTGA-TGACTGTCAGGGATG 6635 || || || || || ||| ||| ||||| ||||||| | | || || Sbjct 276 TTCGAGAACAGTCTCAT---CTATTATG---GACCTAGACCTGATTTAATGGAAGTACAA 223 Query 6636 GAAGACTGCTT-AACAGCA---CCCCTCAAAGAGTGTGTTGGGAGGGACAACTGGGAGGA 6691 | ||| ||| | ||| | | | | || |||||||| || || || || Sbjct 222 GGGGACACCTTGATCAGTAAAGCAAGTTATCCTGTCTGTTGGGAAGGCCAGAAAGGGGGT 163 Query 6692 TTGGAGGGTTTAAGACAAAAGGGATGGACAGTTGTTGGTCTCCTAATGATAAGGCGAGAG 6751 | |||||||| |||||||| || |||| |||| | | || || | |||||| Sbjct 162 CTCGAGGGTTTGAGACAAAAAGGGTGGAGTATTGTGAATTTGCTCGTGCTCTTGCGAGAA 103 Query 6752 GCTAGAATCAGAAACACCGCTGTCAAGATACTAGCACAAGGTGATAATCAAGTGATCTG 6810 |||| | | |||| ||| |||||||| |||||||| || || || || ||||| || Sbjct 102 GCTAAGACCCGAAATACCCTTGTCAAGACCCTAGCACAGGGGGACAACCAGGTGATATG 44 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35168402306368