Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_028241.1 Length=14478 Score E Sequences producing significant alignments: (Bits) Value seq176488 122 8e-24 seq283927 93.3 4e-15 >seq176488 Length=2532 Score = 122 bits (134), Expect = 8e-24 Identities = 352/534 (66%), Gaps = 32/534 (6%) Strand=Plus/Minus Query 9624 GGAATCCTTGGTAATTGGCCTTAAAGGGAAAGAGAGGGAATTGAAAGAAGCCGGACGATT 9683 |||| |||| | |||||| | |||||||| ||||| ||| | || ||| | | ||| Sbjct 640 GGAAGACTTGATCATTGGCTTGAAAGGGAAGGAGAGAGAAGTAAAGAAAGAGAGGCAATT 581 Query 9684 CTTTTCCTTAATGTCCTGGGAATTAAGGGAATATTTCGTTGTAACTGAATTACTGATTAA 9743 ||| ||| | ||||| ||| | |||||| |||| || || ||| ||| || || || Sbjct 580 CTTCTCCCTCATGTCTTGGAAGTTAAGGCAATACTTTGTCTCAACAGAACATCTTATAAA 521 Query 9744 ACAACATTATGTAAAGTTGTTCAAAGGTTTGACCATGGCAGATGATCTCCAAACTGTCAT 9803 | || || || ||||||| || | || ||||||||||| ||| || || | Sbjct 520 AGAATTGTACGTGCCACTGTTCAACGGACTCACGATGGCAGATGACCTCACAAAGGTTAC 461 Query 9804 AAAGAAAATGCTTGATACCTC---ACATGGTCAGGGAACCCGTACATATGATGCCATCAC 9860 ||||||| | || || | || |||| || ||| | || |||| | | | Sbjct 460 AAAGAAACTTCTCGACAGTTCTTTACAT---CAAGGA---CAAAC---TGATTACTCCTC 410 Query 9861 CATT------GCCAATAACATAGACTATGAAAAATGGAATAATTATCAGAGAATGGAAT- 9913 |||| ||||| | | || || | ||||||||||| |||| | ||| | Sbjct 409 CATTTGTGTGGCCAACCATGTTGATTACCAGAAATGGAATAACCATCAACG--TGGTTTG 352 Query 9914 -CAAACGGTCCTGTATTCAGAGTAATGGGTCAATTCTTGGGATATCCTAATTTGATACTC 9972 | ||| ||||| ||| |||| |||||||| || |||| || | | | || Sbjct 351 GCCAACAACCCTGTCTTCCGAGTGATGGGTCAGTTTGTGGGTCTGCCAGAACTTTTCGTC 292 Query 9973 AGGACCCATGAGTTTTTTCAGAAAAGTTTAATTTATTATAATCAAAGACCTGATTTGATG 10032 || || || ||||| || |||| ||| | || |||||| | ||||||||||| ||| Sbjct 291 AGAACGCACGAGTTCTTCGAGAACAGTCTCATCTATTATGGACCTAGACCTGATTTAATG 232 Query 10033 AGAGTAGTTGGGAAAAGTGCTATGAACAGTACTAAACA---TATC--GTGTGCTGGGAAG 10087 |||| ||| | | | ||| ||||| || || |||| || || ||||||| Sbjct 231 GAAGTACAAGGGGACA---CCTTGATCAGTA--AAGCAAGTTATCCTGTCTGTTGGGAAG 177 Query 10088 GGCAGCTGGGTGGTTTAGAAGGGCTGAGACAAAAGGGGTGGAGTGTTGTCAATT 10141 | ||| || ||| | || || |||||||||| ||||||||| |||| |||| Sbjct 176 GCCAGAAAGGGGGTCTCGAGGGTTTGAGACAAAAAGGGTGGAGTATTGTGAATT 123 >seq283927 Length=152763 Score = 93.3 bits (102), Expect = 4e-15 Identities = 116/156 (74%), Gaps = 5/156 (3%) Strand=Plus/Minus Query 9856 ATCACCATTGCCAATAACATAGACTATGAAAAATGGAATAATTATCAGAGAATGGAATCA 9915 || ||||||||||| | || || || ||||||||||||||| | || ||| || | Sbjct 1438 ATTACCATTGCCAACCATATCGATTACGAAAAATGGAATAATCACCAAAGA---GATGCT 1382 Query 9916 AACGGTCCTGTATTCAGAGTAATGGGTCAATTCTTGGGATATCCTAATTTGATA-CTCAG 9974 ||| || || ||||| || ||||| |||||||||||| || || ||| || ||| | Sbjct 1381 AACAACCCGGTGTTCAGCGTGATGGGGCAATTCTTGGGACTGCCAAACTTGTTAACTC-G 1323 Query 9975 GACCCATGAGTTTTTTCAGAAAAGTTTAATTTATTA 10010 ||||| | || ||| | || |||||||||||||| Sbjct 1322 CACCCACAAATTCTTTGAAAACAGTTTAATTTATTA 1287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46013774143036