Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_028243.1 Length=10795 Score E Sequences producing significant alignments: (Bits) Value seq245199 131 1e-26 >seq245199 Length=142685 Score = 131 bits (144), Expect = 1e-26 Identities = 232/335 (69%), Gaps = 5/335 (1%) Strand=Plus/Minus Query 6896 CATCCAGCTCGTCCAGGAACGCAACGTAGAGGCTGTGAGGGTTAAGGCCTGCCTAGTGG- 6954 |||||| || || ||||| | || || ||||| || | ||| |||| | ||| Sbjct 25722 CATCCAACTGGTGCAGGAGAGAAATGTCGAGGCAGTTGACATCAAGTTCTGCTTCTTGGT 25663 Query 6955 --AACGCAGTTACCTGCTGCAGCACTGCGGGATGCACTCTCACTCGTCCATGACCTTCAA 7012 || | || |||||| |||| ||||| |||||||| || ||||| || ||||||||||| Sbjct 25662 AGAAAGGAGCTACCTGTTGCAACACTGTGGGATGCATTCCCACTCCTCAATGACCTTCAA 25603 Query 7013 CGGACTGGTGACGAGT-GAGATCTTGCGAGTGCCCAAAGAGGCATGCGACGCACTGCATC 7071 || || || || ||| ||| ||| || | ||| | |||||||| | || | || | Sbjct 25602 TGGTCTTGTAACTAGTGGAGTTCTCAGGA-TCCCCCAGGAGGCATGTAATGCTTTACACC 25544 Query 7072 TGTACGGATCATTCCACACGTCGGGAGGAAAGGTGCTCACCGGATTTGCGGCTAATACTA 7131 | || |||||| | | ||| || || || | ||||||| ||||| || || | | Sbjct 25543 TTTATGGATCACTACGCACTTCTGGGGGTCAAATGCTCACTGGATTCATGGTCAACAAAA 25484 Query 7132 CAACGGTAGTACCGGTGGTTGAAATGGGGGTGATAGATGCTGGGTCCGCCACATGTAAGG 7191 || | || || ||||| || ||||| || ||||| ||||| || ||||||| Sbjct 25483 TGACCATTGTTCCTGTGGTGGAGATGGGAACCATTGATGCAGGGTCGGCAACATGTAGTA 25424 Query 7192 GTGCCACCTTCACTCTGAATGGGGCGACGTACACA 7226 |||||| |||||| || ||||| | | | ||| || Sbjct 25423 GTGCCAGCTTCACGCTCAATGGCGTGTCATACGCA 25389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34285686880592