Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_028246.1 Length=14627 Score E Sequences producing significant alignments: (Bits) Value seq49187 122 8e-24 seq133769 120 3e-23 seq283927 87.8 2e-13 seq292816 84.2 2e-12 >seq49187 Length=20191 Score = 122 bits (134), Expect = 8e-24 Identities = 243/360 (68%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 9753 CTGGTAATAGGACTAAAAGCTAAAGAGAGAGAATTAAAGATAGAAGGTAGAtttttttCA 9812 ||| |||| || || |||| || || |||||| |||||| ||| | ||||| || || Sbjct 6352 CTGATAATCGGGCTCAAAGTAAAGGAAAGAGAAGTAAAGAAAGAGGAAAGATTCTTCTCG 6411 Query 9813 TTGATGTCATATGACATGAGGGATTACTTCGTAATGACTGAATATTTGATaaaaaaaTAT 9872 | ||||| | | ||||| | |||| ||| | || || | || ||||| | | Sbjct 6412 CTCATGTCGTGGAATCTGAGGCAATACTCCGTCACAACAGAGCACTTAATAAAGGAGTTC 6471 Query 9873 TATGTACCATTATTCAAAGGATTGACCATGGCTGATGATCAAAATACAGTAGTAAAGAAA 9932 ||||| || | ||| |||||||| ||||||||||||| | || || ||||||| Sbjct 6472 TATGTGCCCCTTTTCTCGGGATTGACTATGGCTGATGATCTGACTAAGGTGACAAAGAAA 6531 Query 9933 ATGCTCAAAGTTTCTAAAGGTCAAGGGCTAACAGATTATAAAGAGATAACATTTGCTAAT 9992 | || | ||| | ||||||| | | ||||| || | | || ||| Sbjct 6532 CTCCTAGATAGTTCGATCAACCAAGGGCAGAATTACTATAACTCCATTTCTCTGGCAAAT 6591 Query 9993 CACTTGGATTATGAGAAGTGGAATAATTATCAAAGGAGGGAATCAAACGGTCCGGTGTTC 10052 ||| | |||||||| || |||||||| |||| || |||| | || |||| |||||| Sbjct 6592 CACGTAGATTATGAAAAATGGAATAACCATCAGCGGGGGGAGGCGAATAGTCCTGTGTTC 6651 Query 10053 AGAGTAATGGGCCAGTTTTTAGGTCTACCTCACTTAATAGAAAGAACTCACGAGTTCTTT 10112 |||||||||| ||||| ||||| | ||| | | | | | ||||| ||||||||| Sbjct 6652 CGAGTAATGGGTCAGTTCCTAGGTTTGCCTGAGCTGTTCGTTCGCACTCATGAGTTCTTT 6711 >seq133769 Length=136818 Score = 120 bits (132), Expect = 3e-23 Identities = 328/499 (66%), Gaps = 10/499 (2%) Strand=Plus/Minus Query 9759 ATAGGACTAAAAGCTAAAGAGAGAGAATTAAAGATAGAAGGTAGAtttttttCATTGATG 9818 || ||||| || | ||||||||||| | |||| ||| ||| ||||||| || | ||| Sbjct 122639 ATCGGACTGAAGGGAAAAGAGAGAGAGGTGAAGAAAGAGGGTCGATTTTTCTCTCTCATG 122580 Query 9819 TCATATGACATGAGGGATTACTTCGTAATGACTGAATATTTGATaaaaaaaTATTATGTA 9878 || | | | | | ||||| || || ||| || | |||||| | | |||||| Sbjct 122579 TCGTGGAAGTTACGACAATACTTTGTCTCAACAGAACATCTCATAAAAGAGTTGTATGTA 122520 Query 9879 CCATTATTCAAAGGATTGACCATGGCTGATGATCAAAATACAGTAGTAAAGAAAATGCTC 9938 ||| | || | ||| | || ||||| || || | | | ||| ||||||| | ||| Sbjct 122519 CCACTGTTTAGTGGACTTACAATGGCGGACGACCTCACAAAAGTTACAAAGAAACTTCTC 122460 Query 9939 AAAGTTTCTAAAGGTCAAGGGCTAACAGATTATAAAGAGATAACATTTGCTAATCACTTG 9998 | |||| | |||||| | |||||| || | || | || || || | Sbjct 122459 GACAGTTCTTTACATCAAGGACGAACAGACTACTCATCCATTTGTGTAGCCAACCATGTT 122400 Query 9999 GATTATGAGAAGTGGAATAATTATCAAAGGAGGGAATCAAACGGTCCGGTGTTCAGAGTA 10058 ||||| | |||||||| ||| ||||| | | | ||| | | || |||||||| Sbjct 122399 GATTACCAAAAGTGGAACAATCATCAACGTGGTTCGGCTAACAATACTGTCTTCAGAGTC 122340 Query 10059 ATGGGCCAGTTTTTAGGTCTACCTCACTTAATAGAAAGAACTCACGAGTTCTTTGAAAAT 10118 ||||| |||||| | || ||||| | | | | ||||| || |||||||| || || Sbjct 122339 ATGGGTCAGTTTGTGGGACTACCAGAACTTTTCGTGAGAACGCATGAGTTCTTCGAGAAC 122280 Query 10119 AGTCTAATTTATTACAATGG---CCGACCTGATTTAATG--TATGTCAGAAATAAAGTTG 10173 |||| || ||| |||| | |||| ||||||||| ||| || | ||| Sbjct 122279 AGTC---TTGTCTACTATGGACCCAGACCGGATTTAATGGACATGCAAGGGGATACTTTG 122223 Query 10174 TACACTCCAAAGGTGATGACATCGTTTGCTGGGAAGGACAAAAAGGAGGATTAGAGGGTC 10233 | ||||| || | ||| ||||||||||||||||||||||| | || || | Sbjct 122222 ATTA--GCAAAGCAGACTATCCCGTATGCTGGGAAGGACAAAAAGGAGGTCTCGAAGGCC 122165 Query 10234 TAAGACAAAAAGGATGGAG 10252 |||||||||| || ||||| Sbjct 122164 TAAGACAAAAGGGGTGGAG 122146 >seq283927 Length=152763 Score = 87.8 bits (96), Expect = 2e-13 Identities = 276/426 (65%), Gaps = 4/426 (1%) Strand=Plus/Minus Query 9708 GAATTTTTAAAAGAAATTAATGATCACGGTTTGGAGTGGGAAAAACTGGTAATAGGACTA 9767 || ||| ||| | ||| ||||| |||| ||||| | || | || | || ||| || Sbjct 1707 GACTTTCTAAGACAAAAGAATGACAACGGATTGGACAGAGATGATCTCATCATTGGATTA 1648 Query 9768 AAAGCTAAAGAGAGAGAATTAAAGATAGAAGGTAGAtttttttCATTGATGTCATATGAC 9827 |||| || || | ||| | |||| ||||| ||||| || || | ||||| | | Sbjct 1647 AAAGGAAAGGAATGTGAAATCAAGAAGGAAGGAAGATTCTTCTCCCTAATGTCCTGGAAT 1588 Query 9828 ATGAGGGATTACTTCGTAATGACTGAATATTTGATaaaaaaaTATTATGTACCATTATTC 9887 | | || ||||| || || ||| | | |||| ||| || |||| |||| Sbjct 1587 CTTCAACAATATTTCGTCATTACAGAA-ACCTACTAAAGGAATTCTACATACCCCTATTT 1529 Query 9888 AAAGGATTGACCATGGCTGATGATCAAAATACAGTAGTAAAGAAAATGCTCAAAGTTTCT 9947 |||| | |||||||| || || | ||| | ||| || || | | ||| Sbjct 1528 GCAGGACTCACCATGGCAGACGACTTGATGGAAGTCGCAAAAAAGTTGTTAGACAATTCA 1469 Query 9948 AAAGGTCAAGGGCTAACAGATTATAAAGAGATAACATTTGCTAATCACTTGGATTATGAG 10007 || ||||||| ||||| || ||| || |||| || || | ||||| || Sbjct 1468 CCGGGACAAGGGCAGGACGATTACCAATTGATTACCATTGCCAACCATATCGATTACGAA 1409 Query 10008 AAGTGGAATAATTATCAAAGGAGGGAATCAAACGGTCCGGTGTTCAGAGTAATGGGCCAG 10067 || ||||||||| | ||||| || | ||| ||||||||||| || ||||| || Sbjct 1408 AAATGGAATAATCACCAAAGA---GATGCTAACAACCCGGTGTTCAGCGTGATGGGGCAA 1352 Query 10068 TTTTTAGGTCTACCTCACTTAATAGAAAGAACTCACGAGTTCTTTGAAAATAGTCTAATT 10127 || || || || || |||| || | || ||| | ||||||||||| ||| ||||| Sbjct 1351 TTCTTGGGACTGCCAAACTTGTTAACTCGCACCCACAAATTCTTTGAAAACAGTTTAATT 1292 Query 10128 TATTAC 10133 |||||| Sbjct 1291 TATTAC 1286 >seq292816 Length=4775 Score = 84.2 bits (92), Expect = 2e-12 Identities = 244/369 (66%), Gaps = 15/369 (4%) Strand=Plus/Minus Query 9754 TGGTAATAGGACTAAAAGCTAAAGAGAGAGAATTAAAGATAGAAGGTAGA-tttttttCA 9812 ||||||| ||||| || | ||||||||||||| | || | ||||| ||| ||||||||| Sbjct 1758 TGGTAATTGGACTGAAGGGTAAAGAGAGAGAAGTGAAAAAGGAAGGCAGATTTTTTTTCA 1699 Query 9813 TTGATGTCATATGACATGAGGGATTACTTCGTAATGACTGAATATTTGATaaaaaaaTAT 9872 | ||||||| | | | | | ||||| | ||||| | | ||||| ||||| Sbjct 1698 CTCATGTCATGGAATCTCCGTCAGTGTTTCGTGACAACTGAGCACCTTATAAAGGAATAT 1639 Query 9873 TATGTACCATTATTCAAAGGATTGACCATGGCTGATGATC------AAAATACAG-TAGT 9925 ||||| || | || |||||||| ||||| || |||| || || || ||| Sbjct 1638 TATGTTCCTCTTTTTTCTGGATTGACTATGGCAGACGATCTCACCAAAGTTATAGAAAGT 1579 Query 9926 AAAGAAAA---TGCTCAAAGTTTCTAAAGGTCAAGGGCTAACAGATTATAAAGAGATAAC 9982 | ||||| |||| || ||| |||||||| | || ||| | || || Sbjct 1578 TACGAAAAAGTTGCTAGAA--CTCTGCCGGTCAAGGCCAGGTCGACTATTCATCAATCAC 1521 Query 9983 ATTTGCTAATCACTTGGATTATGAGAAGTGGAATAATTATCAAAGGAGGGAATCAAACGG 10042 || | || || | || || | ||||||||||| ||||| | ||| | ||| Sbjct 1520 CTTACCCAACCATGTAGACTACAAAAAGTGGAATAACCATCAACGTGCCGAAGCCAACTA 1461 Query 10043 T-CCGGTGTTCAGAGTAATGGGCCAGTTTTTAGGTCTACCTCACTTAATAGAAAGAACTC 10101 | ||| | |||| ||||||||| || ||| | || ||| | | | | || ||||||| Sbjct 1460 TCCCGCTTTTCA-AGTAATGGGACAATTTCTGGGACTATCCGAAGTGTTTGACAGAACTC 1402 Query 10102 ACGAGTTCT 10110 | ||||||| Sbjct 1401 ATGAGTTCT 1393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46488537133640