Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_028255.1 Length=11003 Score E Sequences producing significant alignments: (Bits) Value seq176488 159 2e-35 seq133769 138 8e-29 seq49187 109 4e-20 seq283927 78.8 6e-11 >seq176488 Length=2532 Score = 159 bits (176), Expect = 2e-35 Identities = 398/601 (66%), Gaps = 10/601 (2%) Strand=Plus/Minus Query 6156 GAAGATTTGGTGATTGGTCTCAAAGGAAAAGAGAGAGAATTGAAACTAGCCGGAAGATTC 6215 ||||| ||| | ||||| | ||||| || ||||||||| | || || | |||| Sbjct 639 GAAGACTTGATCATTGGCTTGAAAGGGAAGGAGAGAGAAGTAAAGAAAGAGAGGCAATTC 580 Query 6216 TTTTCCTTGATGTCTTGGAAATTACGTGAATATTTTGTAATCACGGAATATCTTATCAAA 6275 || ||| | ||||||||||| ||| | |||| ||||| || ||| ||||||| ||| Sbjct 579 TTCTCCCTCATGTCTTGGAAGTTAAGGCAATACTTTGTCTCAACAGAACATCTTATAAAA 520 Query 6276 ACACACTTTGTCCCCATGTTCAAGGGACTAACCATGGCAGATGATCTAACTGCTGTCATC 6335 | | || || ||||||| ||||| || ||||||||||| || || || | Sbjct 519 GAATTGTACGTGCCACTGTTCAACGGACTCACGATGGCAGATGACCTCACAAAGGTTACA 460 Query 6336 aaaaaaaTGTTGGATACATCCTCAGGTCAAGGATTGGACAATTACGAGTCCATTTGTATC 6395 || ||| | | || | || | | ||||||| ||||| ||||||||| | Sbjct 459 AAGAAACTTCTCGACAGTTCTTTACATCAAGGACAAACTGATTACTCCTCCATTTGTGTG 400 Query 6396 GCGAATCACATTGATTATGAGAAATGGAACAACCATCAACGCAAGGAAT--CCAATGGGC 6453 || || || ||||||| |||||||||| ||||||||||| || | |||| | Sbjct 399 GCCAACCATGTTGATTACCAGAAATGGAATAACCATCAACG--TGGTTTGGCCAACAACC 342 Query 6454 CTGTATTTCGTGTGATGGGACAGTTCCTAGGATACCCAAACCTGATTGAGAGGACACACG 6513 |||| || || |||||||| ||||| | || ||| | || | | || || |||| Sbjct 341 CTGTCTTCCGAGTGATGGGTCAGTTTGTGGGTCTGCCAGAACTTTTCGTCAGAACGCACG 282 Query 6514 AATTCTTCGAGAAGAGCTTGATCTACTATAATGGAC---GTCCAGACTTAATGCAGGTCT 6570 | ||||||||||| || | || |||| |||||| | || || |||||| | || Sbjct 281 AGTTCTTCGAGAACAGTCTCAT---CTATTATGGACCTAGACCTGATTTAATGGAAGTAC 225 Query 6571 CGGGAAATACCCTCATCAACAGGTCTAATCAATTGGTCTGCTGGCAGGGACAAGCAGGAG 6630 || | ||| | |||| | | | | | ||||| ||| | || || ||| | Sbjct 224 AAGGGGACACCTTGATCAGTAAAGCAAGTTATCCTGTCTGTTGGGAAGGCCAGAAAGGGG 165 Query 6631 GGCTGGAAGGCCTTCGTCAGAAAGGATGGAGCATCCTGAACTTGCTAGTAATCCAAAGAG 6690 | || || || | | || ||||| ||||| || |||| ||||| || || ||| Sbjct 164 GTCTCGAGGGTTTGAGACAAAAAGGGTGGAGTATTGTGAATTTGCTCGTGCTCTTGCGAG 105 Query 6691 AAGCTAAAGTCCGAAACACAGCAGTCAAGGTGTTGGCACAAGGGGATAATCAAGTGATTT 6750 ||||||| |||||| || |||||| | ||||| ||||| || || ||||| | Sbjct 104 AAGCTAAGACCCGAAATACCCTTGTCAAGACCCTAGCACAGGGGGACAACCAGGTGATAT 45 Query 6751 G 6751 | Sbjct 44 G 44 >seq133769 Length=136818 Score = 138 bits (152), Expect = 8e-29 Identities = 399/606 (66%), Gaps = 16/606 (3%) Strand=Plus/Minus Query 6156 GAAGATTTGGTGATTGGTCTCAAAGGAAAAGAGAGAGAATTGAAACTAGCCGGAAGATTC 6215 ||||| || | || || || || |||||||||||||| |||| || || |||| Sbjct 122651 GAAGACTTAATCATCGGACTGAAGGGAAAAGAGAGAGAGGTGAAGAAAGAGGGTCGATTT 122592 Query 6216 TTTTCCTTGATGTCTTGGAAATTACGTGAATATTTTGTAATCACGGAATATCTTATCAAA 6275 || || | ||||| ||||| ||||| |||| ||||| || ||| |||| || ||| Sbjct 122591 TTCTCTCTCATGTCGTGGAAGTTACGACAATACTTTGTCTCAACAGAACATCTCATAAAA 122532 Query 6276 ACACACTTTGTCCCCATGTTCAAGGGACTAACCATGGCAGATGATCTAACTGCTGTCATC 6335 | ||| || |||| | ||||| || ||||| || || || || || | Sbjct 122531 GAGTTGTATGTACCACTGTTTAGTGGACTTACAATGGCGGACGACCTCACAAAAGTTACA 122472 Query 6336 aaaaaaaTGTTGGATACATCCTCAGGTCAAGGATTGGACA-ATTACGAGTCCATTTGTAT 6394 || ||| | | || | || | | ||||||| | ||| | ||| ||||||||| | Sbjct 122471 AAGAAACTTCTCGACAGTTCTTTACATCAAGGAC-GAACAGACTACTCATCCATTTGTGT 122413 Query 6395 CGCGAATCACATTGATTATGAGAAATGGAACAACCATCAACGCAA---GGAATCCAATGG 6451 || || || ||||||| | || |||||||| |||||||| || |||| Sbjct 122412 AGCCAACCATGTTGATTACCAAAAGTGGAACAATCATCAACGTGGTTCGGCTAACAATA- 122354 Query 6452 GCCTGTATTTCGTGTGATGGGACAGTTCCTAGGATACCCAAACCTGATTGAGAGGACACA 6511 |||| || | || ||||| ||||| | ||| ||| | || | | ||| || || Sbjct 122353 --CTGTCTTCAGAGTCATGGGTCAGTTTGTGGGACTACCAGAACTTTTCGTGAGAACGCA 122296 Query 6512 CGAATTCTTCGAGAAGAG-CTTGATCTACTATAATGGAC---GTCCAGACTTAATGCAGG 6567 || ||||||||||| || |||| |||||| |||||| | || || |||||| | Sbjct 122295 TGAGTTCTTCGAGAACAGTCTTG-TCTACT---ATGGACCCAGACCGGATTTAATGGACA 122240 Query 6568 TCTCGGGAAATACCCTCATCAACAGGTCTAATCAATTGGTCTGCTGGCAGGGACAAGCAG 6627 | || |||| | || | || | | | || |||||| | |||||| || Sbjct 122239 TGCAAGGGGATACTTTGATTAGCAAAGCAGACTATCCCGTATGCTGGGAAGGACAAAAAG 122180 Query 6628 GAGGGCTGGAAGGCCTTCGTCAGAAAGGATGGAGCATCCTGAACTTGCTAGTAATCCAAA 6687 |||| || |||||||| | || || || |||||||| | || | || ||| ||| Sbjct 122179 GAGGTCTCGAAGGCCTAAGACAAAAGGGGTGGAGCATTGTAAATCTTCTCGTACTCCTGC 122120 Query 6688 GAGAAGCTAAAGTCCGAAACACAGCAGTCAAGGTGTTGGCACAAGGGGATAATCAAGTGA 6747 |||| || ||| ||| ||||| ||| || || || |||||||| || ||||||| Sbjct 122119 GAGAGGCAAAAACCCGTAACACTTTAGTTAAAACATTAGCGCAAGGGGACAACCAAGTGA 122060 Query 6748 TTTGCA 6753 | |||| Sbjct 122059 TCTGCA 122054 >seq49187 Length=20191 Score = 109 bits (120), Expect = 4e-20 Identities = 254/374 (68%), Gaps = 12/374 (3%) Strand=Plus/Plus Query 6117 GAGTTCTTGAACCAAATAGACAAGTATGGACT-AGACGATGAAGATTTGGTGATTGGTCT 6175 ||||||||| | ||| || | | |||||| | | || || || || | || || || Sbjct 6307 GAGTTCTTGGAAAGCATAAACGAATCTGGACTCACAAGA-GATGACCTGATAATCGGGCT 6365 Query 6176 CAAAGGAAAAGAGAGAGAATTGAAACTAGCCGGAAGATTCTTTTCCTTGATGTCTTGGAA 6235 ||||| ||| || |||||| | || || | ||||||||| || | ||||| ||||| Sbjct 6366 CAAAGTAAAGGAAAGAGAAGTAAAGAAAGAGGAAAGATTCTTCTCGCTCATGTCGTGGAA 6425 Query 6236 ATTACGTGAATATTTTGTAATCACGGAATATCTTATCAAAACACA-CTTTGTCCCCATGT 6294 | | |||| | || | || || | |||| ||| | || ||| ||| | | Sbjct 6426 TCTGAGGCAATACTCCGTCACAACAGAGCA-CTTAATAAAGGAGTTCTATGTGCCCCTTT 6484 Query 6295 TCAAGGGACTAACCATGGCAGATGATCTAACTGCTGTCATCaaaaaaaTGTTGGATACAT 6354 || |||| | || ||||| |||||||| ||| || | || ||| | | |||| | Sbjct 6485 TCTCGGGATTGACTATGGCTGATGATCTGACTAAGGTGACAAAGAAACTCCTAGATAGTT 6544 Query 6355 CC-TCAGGTCAAGGATTGGACAATTACGAG---TCCATTTGTATCGCGAATCACATTGAT 6410 | ||| ||||| | | |||||| | ||||||| | | || |||||| | ||| Sbjct 6545 CGATCAAC-CAAGG---GCAGAATTACTATAACTCCATTTCTCTGGCAAATCACGTAGAT 6600 Query 6411 TATGAGAAATGGAACAACCATCAACGCAAGGAATCCAATGGGCCTGTATTTCGTGTGATG 6470 ||||| |||||||| |||||||| || ||| | ||| | ||||| || || || ||| Sbjct 6601 TATGAAAAATGGAATAACCATCAGCGGGGGGAGGCGAATAGTCCTGTGTTCCGAGTAATG 6660 Query 6471 GGACAGTTCCTAGG 6484 || ||||||||||| Sbjct 6661 GGTCAGTTCCTAGG 6674 >seq283927 Length=152763 Score = 78.8 bits (86), Expect = 6e-11 Identities = 316/494 (64%), Gaps = 8/494 (2%) Strand=Plus/Minus Query 6168 ATTGGTCTCAAAGGAAAAGAGAGAGAATTGAAACTAGCCGGAAGATTCTTTTCCTTGATG 6227 ||||| | |||||||| || | ||| | || | ||||||||||| ||| | ||| Sbjct 1656 ATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAAGGAAGATTCTTCTCCCTAATG 1597 Query 6228 TCTTGGAAATTACGTGAATATTTTGTAATCACGGAATATCTTATCAAAACACACTTTGTC 6287 || ||||| | | ||||||| || || || ||| | || | || | || | Sbjct 1596 TCCTGGAATCTTCAACAATATTTCGTCATTACAGAA-ACCTACTAAAGGAATTCTACATA 1538 Query 6288 CCCATGTTCAAGGGACTAACCATGGCAGATGATCTAACTGCTGTCATCaaaaaaaTGTTG 6347 ||| | || ||||| ||||||||||| || | | | ||| ||||| |||| Sbjct 1537 CCCCTATTTGCAGGACTCACCATGGCAGACGACTTGATGGAAGTCGCAAAAAAGTTGTTA 1478 Query 6348 GATACATCCTCAGGTCAAGGATTGGACAATTACGAGTCCATTTGTATCGCGAATCACATT 6407 || | || | || ||||| |||| ||||| | | ||| || || || || || Sbjct 1477 GACAATTCACCGGGACAAGGGCAGGACGATTACCAATTGATTACCATTGCCAACCATATC 1418 Query 6408 GATTATGAGAAATGGAACAACCATCAACGCAAGGAATCCAATGGGCCTGTATTTCGTGTG 6467 ||||| || |||||||| || || ||| | || | || || || || | ||| Sbjct 1417 GATTACGAAAAATGGAATAATCACCAA---AGAGATGCTAACAACCCGGTGTTCAGCGTG 1361 Query 6468 ATGGGACAGTTCCTAGGATACCCAAACCTGATTGAGAGGACACACGAATTCTTCGAGAAG 6527 ||||| || ||| | ||| |||||| || | | || ||| ||||||| || || Sbjct 1360 ATGGGGCAATTCTTGGGACTGCCAAACTTGTTAACTCGCACCCACAAATTCTTTGAAAAC 1301 Query 6528 AGCTTGATCTACTATAATGGACGTCCAGACTTAATGCAGGTCTCGGGAAATACCCTCATC 6587 || || || || || |||||| ||| | ||| ||| | |||| | || || Sbjct 1300 AGTTTAATTTATTACGGACCACGTCCGGACCTGATGGAGGCCAAGGGAGACACGCTAGAG 1241 Query 6588 AAC--AGGTCTAATCAATTGGTCTGCTGGCAGGGACAAGCAGGAGGGCTGGAAGGCCTTC 6645 ||| ||| | || | || |||||| | || || || || ||||| || || | Sbjct 1240 AACCGAGGCCACTTCCCT--GTTTGCTGGAATGGCCAGTTGGGTGGACTGGAGGGTCTCC 1183 Query 6646 GTCAGAAAGGATGG 6659 ||||||| || ||| Sbjct 1182 GTCAGAAGGGGTGG 1169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34948520124496