Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_031079.1 Length=11843 Score E Sequences producing significant alignments: (Bits) Value seq176488 158 9e-35 seq90283 140 2e-29 seq133769 131 1e-26 seq49187 125 5e-25 seq283927 104 2e-18 seq268548 89.7 4e-14 seq115841 86.0 5e-13 seq200647 78.8 7e-11 >seq176488 Length=2532 Score = 158 bits (174), Expect = 9e-35 Identities = 414/626 (66%), Gaps = 8/626 (1%) Strand=Plus/Minus Query 6739 ATCAATGACGTTGGCTTACCAA--GAAGATCTCTGGTGATCGGGTTGAAGGGGAAGGAAA 6796 ||||||||| ||| | || | ||||| || || | || || ||||| |||||||| | Sbjct 663 ATCAATGACAAGGGCCTCCCCAAGGAAGA-CT-TGATCATTGGCTTGAAAGGGAAGGAGA 606 Query 6797 GGGAGATCAAGAAGAATGGGAGGTTCTTCGCACTCATGTCCTGGGACCTTCGGGAGTACT 6856 | || | ||||| | || |||||| | |||||||| ||| | | || | |||| Sbjct 605 GAGAAGTAAAGAAAGAGAGGCAATTCTTCTCCCTCATGTCTTGGAAGTTAAGGCAATACT 546 Query 6857 TTGTATCCACTGAATATCTTATTAAAATGTTCTATGTCCCTTTGTTCCAAGGTCTGACCA 6916 |||| || || ||| ||||||| ||| || || || || ||||| | || || || | Sbjct 545 TTGTCTCAACAGAACATCTTATAAAAGAATTGTACGTGCCACTGTTCAACGGACTCACGA 486 Query 6917 TGGCGGATGATCTGAACTCTGTCACCAAAAAGATCCTTGGGTGCACCTTCGGTCAAGGGC 6976 |||| ||||| || | || || || || | || | | | || |||||| | Sbjct 485 TGGCAGATGACCTCACAAAGGTTACAAAGAAACTTCTCGACAGTTCTTTACATCAAGGAC 426 Query 6977 TTGCAGGGTACACTGCAGTTACATTCACTAACCACCTAGATTACGAAAAGTGGAACAACC 7036 | | ||| | | || | | ||||| | |||||| | || ||||| |||| Sbjct 425 AAACTGATTACTCCTCCATTTGTGTGGCCAACCATGTTGATTACCAGAAATGGAATAACC 366 Query 7037 ATCAGAGGCGGGAGGCCACTGACCCGGTTTTCAGAGTGATGGGTCAGTTCTTTGGACTTC 7096 |||| | | ||||| |||| || ||| |||||||||||||||| | || || | Sbjct 365 ATCAACGTGGTTTGGCCAACAACCCTGTCTTCCGAGTGATGGGTCAGTTTGTGGGTCTGC 306 Query 7097 CTGAGCTGTTTGTCCGCACCCACGAGTTCTTCCAGAAGAGTCTGATCTATTACGGAGAAA 7156 | || || || ||| | || |||||||||||| |||| ||||| |||||||| ||| | Sbjct 305 CAGAACTTTTCGTCAGAACGCACGAGTTCTTCGAGAACAGTCTCATCTATTATGGACCTA 246 Query 7157 GACCAGACCTGATGCAAGTGGTGGACGGAAAAGTTTCATCCATCGGCGATACTATGGTGG 7216 |||| || | ||| |||| | || | | || ||| | | ||| || Sbjct 245 GACCTGATTTAATGGAAGT--ACAAGGGGACACCTTGATCAGTAAAGCAAGTTATCCTGT 188 Query 7217 C--ATGGGAAGGACAAGAAGGAGGGTTGGAGGGGTTGAGACAAAAGGGATGGAGTGTCCT 7274 | |||||||| || |||| || | ||||| ||||||||||| || |||||| | | Sbjct 187 CTGTTGGGAAGGCCAGAAAGGGGGTCTCGAGGGTTTGAGACAAAAAGGGTGGAGTATTGT 128 Query 7275 TAACCTCTTAGTCATTCTCCGGGAGGCACTGATCAGAAACACCCAGGTTCTGACCCTTGC 7334 || | | || | | || || || || | |||| |||| || |||||| || Sbjct 127 GAATTTGCTCGTGCTCTTGCGAGAAGCTAAGACCCGAAATACCCTTGTCAAGACCCTAGC 68 Query 7335 TCAGGGAGACAACCAAGTAATCTGTA 7360 ||||| |||||||| || || |||| Sbjct 67 ACAGGGGGACAACCAGGTGATATGTA 42 >seq90283 Length=1560 Score = 140 bits (154), Expect = 2e-29 Identities = 410/619 (66%), Gaps = 12/619 (2%) Strand=Plus/Plus Query 6759 AAGAAGATCTCTGGTGATCGGGTTGAAGGGGAAGGAAAGGGAGATCAAGAAGAATGGGAG 6818 ||||||| || ||| || ||| | |||||||||||| |||| |||||||| | ||||| Sbjct 225 AAGAAGACCT--GGTCATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAGAAGGAGGGGAG 282 Query 6819 GTTCTTCGCACTCATGTCCTGGGACCTTCGGG--AGTACTTTGTATCCACTGAATATCTT 6876 || ||| | ||||||| ||| || | | | ||||||| || || || || || || Sbjct 283 ATTTTTCTCCCTCATGTTATGGAACTTAAGAGACAGTACTTCGTGTCGACCGAGTACCTC 342 Query 6877 ATTAAAATGTTCTATGTCCCTTTGTTCCAAGGTCTGACCATGGCGGATGATCTGAACTCT 6936 || || | | ||||| || | ||| || | || |||||||| ||| ||| | Sbjct 343 ATCAAGGAGCTGTATGTTCCGCTCTTCTCTGGATTAACAATGGCGGACGATTTGACCAAA 402 Query 6937 GTCACCAAAAAGATCCTTGGGTGCACCTTCGGTCAAGGGCTTGCAGGGTAC-ACTGCAGT 6995 || ||||||||| | || | || || |||||| | | ||| ||| || | Sbjct 403 GTGACCAAAAAGTTACTGGATAATTCCATCAATCAAGGATCAGATGACTACAACTCCA-T 461 Query 6996 TACATTCACTAACCACCTAGATTACGAAAAGTGGAACAACCATCAGAGGCGGGAGGCCAC 7055 | | | | ||||| |||| || ||||| ||||||||||| |||||| | | || | Sbjct 462 TTCTCTTGCAAACCATATAGACTATGAAAAATGGAACAACCACCAGAGGGGAGCAGCTAA 521 Query 7056 TGACCCGGTTTTCAGAGTGATGGGTCAGTTCTTTGGACTTCCTGAGCTGTTTGTCCGCAC 7115 || || | ||| ||||| ||||| || ||| | || | | ||| ||||||| | || Sbjct 522 CGATCCAGCTTTAAGAGTCATGGGACAATTCATCGGTTTACTAGAGTTGTTTGTTCAAAC 581 Query 7116 CCACGAGTTCTTCCAGAAG-AGTCTGATCTATTACGGAGAAAGACCAGACCTGATGCAAG 7174 ||||||||||| || | || || |||| |||||| | || ||| | ||| ||| Sbjct 582 ACACGAGTTCTT-TGGAGGCAGCCTTGTCTACTACGGACCCCGTCCTGACTTAATGGAAG 640 Query 7175 T-GGTGGACGGAAAAGTTTCATCCATCGGCGATACTATGGTGGCATGGGAAGGACAAGAA 7233 | | |||| | | | | | || | | || || ||| | |||| Sbjct 641 TAGATGGAGAGTCACTACGGAACAAAGGGAACTTCCCTGTCTGC-TGGAAGAGACAGCTC 699 Query 7234 GGAGGGTTGGAGGGGTTGAGACAAAAGGGATGGAGTGTCCTTAACCTCTTAGTCATTCTC 7293 ||||| ||||| || | ||||||| || ||||| | | || || || ||| | | Sbjct 700 GGAGGCTTGGAAGGTCTCCGACAAAAAGGTTGGAGCATTGTAAATCTATTGGTCCTCCCG 759 Query 7294 CGGGAGGCACTGATCAGAAACACCCAGGTTCTGACCCTTGCTCAGGGAGACAACCAAGTA 7353 | || || || ||||||||| |||| ||||| | ||||||||||||||||| Sbjct 760 CACGAAGCCAAGAGTAGAAACACCATGGTTAAAACCCTCGTGAAGGGAGACAACCAAGTA 819 Query 7354 ATCTG-TACTCAGTACAAG 7371 || || |||| ||||||| Sbjct 820 ATATGCAACTC-GTACAAG 837 >seq133769 Length=136818 Score = 131 bits (144), Expect = 1e-26 Identities = 384/587 (65%), Gaps = 6/587 (1%) Strand=Plus/Minus Query 6775 ATCGGGTTGAAGGGGAAGGAAAGGGAGATCAAGAAGAATGGGAGGTTCTTCGCACTCATG 6834 ||||| ||||||| || || || ||| | ||||| | || | || ||| | |||||| Sbjct 122639 ATCGGACTGAAGGGAAAAGAGAGAGAGGTGAAGAAAGAGGGTCGATTTTTCTCTCTCATG 122580 Query 6835 TCCTGGGACCTTCGGGAGTACTTTGTATCCACTGAATATCTTATTAAAATGTTCTATGTC 6894 || ||| | | || | |||||||| || || ||| |||| || ||| ||| ||||| Sbjct 122579 TCGTGGAAGTTACGACAATACTTTGTCTCAACAGAACATCTCATAAAAGAGTTGTATGTA 122520 Query 6895 CCTTTGTTCCAAGGTCTGACCATGGCGGATGATCTGAACTCTGTCACCAAAAAGATCCTT 6954 || |||| || || || |||||||| || || | || || || || | || Sbjct 122519 CCACTGTTTAGTGGACTTACAATGGCGGACGACCTCACAAAAGTTACAAAGAAACTTCTC 122460 Query 6955 GGGTGCACCTTCGGTCAAGGGCTTGCAGGGTACACTGCAGTTACATTCACTAACCACCTA 7014 | | | || |||||| | ||| ||| | | || | | ||||| | Sbjct 122459 GACAGTTCTTTACATCAAGGACGAACAGACTACTCATCCATTTGTGTAGCCAACCATGTT 122400 Query 7015 GATTACGAAAAGTGGAACAACCATCAGAGGCGGGAGGCCACTGACCCGGTTTTCAGAGTG 7074 |||||| ||||||||||||| ||||| | | ||| | | | || |||||||| Sbjct 122399 GATTACCAAAAGTGGAACAATCATCAACGTGGTTCGGCTAACAATACTGTCTTCAGAGTC 122340 Query 7075 ATGGGTCAGTTCTTTGGACTTCCTGAGCTGTTTGTCCGCACCCACGAGTTCTTCCAGAAG 7134 ||||||||||| | ||||| || || || || || | || || ||||||||| |||| Sbjct 122339 ATGGGTCAGTTTGTGGGACTACCAGAACTTTTCGTGAGAACGCATGAGTTCTTCGAGAAC 122280 Query 7135 AGTCTGATCTATTACGGAGAAAGACCAGACCTGATGCAAGTGGTGGACGGAAAAGTTTCA 7194 ||||| |||| || ||| ||||| || | ||| | || | || | | ||| | Sbjct 122279 AGTCTTGTCTACTATGGACCCAGACCGGATTTAATGGACATG--CAAGGGGATACTTTGA 122222 Query 7195 TCCATCGGCG-ATACTAT--GGTGGCATGGGAAGGACAAGAAGGAGGGTTGGAGGGGTTG 7251 | | | | | ||||| || |||||||||||| ||||||| | || || | Sbjct 122221 T-TAGCAAAGCAGACTATCCCGTATGCTGGGAAGGACAAAAAGGAGGTCTCGAAGGCCTA 122163 Query 7252 AGACAAAAGGGATGGAGTGTCCTTAACCTCTTAGTCATTCTCCGGGAGGCACTGATCAGA 7311 ||||||||||| ||||| | | || || | || | || || |||||| | | | Sbjct 122162 AGACAAAAGGGGTGGAGCATTGTAAATCTTCTCGTACTCCTGCGAGAGGCAAAAACCCGT 122103 Query 7312 AACACCCAGGTTCTGACCCTTGCTCAGGGAGACAACCAAGTAATCTG 7358 ||||| ||| || | || || || ||||||||||| ||||| Sbjct 122102 AACACTTTAGTTAAAACATTAGCGCAAGGGGACAACCAAGTGATCTG 122056 >seq49187 Length=20191 Score = 125 bits (138), Expect = 5e-25 Identities = 250/364 (69%), Gaps = 10/364 (3%) Strand=Plus/Plus Query 6769 CTGGTGATCGGGTTGAAGGGGAAGGAAAGGGAGATCAAGAAGAATGGGAGGTTCTTCGCA 6828 ||| | |||||| | || | |||||||| || | ||||| | | || |||||| | Sbjct 6352 CTGATAATCGGGCTCAAAGTAAAGGAAAGAGAAGTAAAGAAAGAGGAAAGATTCTTCTCG 6411 Query 6829 CTCATGTCCTGGGACCTTCGGGAGTACTTTGTATCCACTGAATATCTTATTAAAAT-GTT 6887 |||||||| ||| | || || | |||| || | || || | |||| |||| ||| Sbjct 6412 CTCATGTCGTGGAATCTGAGGCAATACTCCGTCACAACAGAGCA-CTTAATAAAGGAGTT 6470 Query 6888 CTATGTCCCTTTGTTCCAAGGTCTGACCATGGCGGATGATCTGAACTCTGTCACCAAAAA 6947 |||||| || | ||| || |||| ||||| |||||||||| || || || || Sbjct 6471 CTATGTGCCCCTTTTCTCGGGATTGACTATGGCTGATGATCTGACTAAGGTGACAAAGAA 6530 Query 6948 GATCCTTGGGTGCACCTTCGGTCAAGGGCTTGCAGGGTAC----ACTGCAGTTACATTCA 7003 |||| | | | || ||||||| | | ||| ||| || || | | Sbjct 6531 ACTCCTAGATAGTTCGATCAACCAAGGGCA-GAAT--TACTATAACTCCATTT-CTCTGG 6586 Query 7004 CTAACCACCTAGATTACGAAAAGTGGAACAACCATCAGAGGCGGGAGGCCACTGACCCGG 7063 | || ||| ||||||| ||||| ||||| ||||||||| || ||||||| | | || | Sbjct 6587 CAAATCACGTAGATTATGAAAAATGGAATAACCATCAGCGGGGGGAGGCGAATAGTCCTG 6646 Query 7064 TTTTCAGAGTGATGGGTCAGTTCTTTGGACTTCCTGAGCTGTTTGTCCGCACCCACGAGT 7123 | ||| |||| |||||||||||| | || | ||||||||||| || ||||| || |||| Sbjct 6647 TGTTCCGAGTAATGGGTCAGTTCCTAGGTTTGCCTGAGCTGTTCGTTCGCACTCATGAGT 6706 Query 7124 TCTT 7127 |||| Sbjct 6707 TCTT 6710 >seq283927 Length=152763 Score = 104 bits (114), Expect = 2e-18 Identities = 276/414 (67%), Gaps = 12/414 (3%) Strand=Plus/Minus Query 6760 AGAAGATCTCTGGTGATCGGGTTGAAGGGGAAGGAAAGGGAGATCAAGAAGAATGGGAGG 6819 ||| |||||| | || || || || || |||||| | || ||||||||| | || || Sbjct 1669 AGATGATCTCA--TCATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAAGGAAGA 1612 Query 6820 TTCTTCGCACTCATGTCCTGGGACCTTCGGGAGTACTTTGTATCCACTGAATATCTTATT 6879 |||||| | || ||||||||| | |||| | || || || || ||| | || | Sbjct 1611 TTCTTCTCCCTAATGTCCTGGAATCTTCAACAATATTTCGTCATTACAGAA-ACCTACTA 1553 Query 6880 AAAATGTTCTATGTCCCTTTGTTCCAAGGTCTGACCATGGCGGATGATCTGAACTCTGTC 6939 || ||||| | || | || ||| || |||||||| || || ||| ||| Sbjct 1552 AAGGAATTCTACATACCCCTATTTGCAGGACTCACCATGGCAGACGACTTGATGGAAGTC 1493 Query 6940 ACCAAAAAGATCCTTGGG--TGCACCTTCGGTCAAGGGCTTGCAGGGTAC-ACTGCAGTT 6996 | |||||| | | | | |||| || ||||||| | | ||| | | | | Sbjct 1492 GCAAAAAAGTTGTTAGACAATTCACCG--GGACAAGGGCAGGACGATTACCAATTGATTA 1435 Query 6997 ACATTCACTAACCACCTAGATTACGAAAAGTGGAACAACCATCAGAGGCGGGAGGCCACT 7056 |||| | ||||| | ||||||||||| ||||| || || || | | || || | Sbjct 1434 CCATTGCC-AACCATATCGATTACGAAAAATGGAATAATCACCAAA---GAGATGCTAAC 1379 Query 7057 GACCCGGTTTTCAGAGTGATGGGTCAGTTCTTTGGACTTCCTGAGCTGTTTGTCCGCACC 7116 ||||||| ||||| |||||||| || ||||| ||||| || | |||| |||||| Sbjct 1378 AACCCGGTGTTCAGCGTGATGGGGCAATTCTTGGGACTGCCAAACTTGTTAACTCGCACC 1319 Query 7117 CACGAGTTCTTCCAGAAGAGTCTGATCTATTACGGAGAAAGACCAGACCTGATG 7170 ||| | ||||| | || ||| | || ||||||||| | | || ||||||||| Sbjct 1318 CACAAATTCTTTGAAAACAGTTTAATTTATTACGGACCACGTCCGGACCTGATG 1265 >seq268548 Length=41840 Score = 89.7 bits (98), Expect = 4e-14 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 6815 GGAGGTTCTTCGCACTCATGTCCTGGGACCTTCGGGAGTACTTTGTATCCACTGAATATC 6874 |||| || ||| | || ||||||||| | || || | ||||||||||||||| ||| ||| Sbjct 553 GGAGATTTTTCTCGCTGATGTCCTGGAAACTACGAGTGTACTTTGTATCCACGGAACATC 612 Query 6875 TTATTAAAATGTTCTATGTCCCTTTGTTCCAAGGTCTGACCATGGCGGATGATCTGAACT 6934 | || || | ||| || || ||||| | || || |||||||| || ||||| | || Sbjct 613 TCATCAAGAAGTTATACGT--TTTTGTCCTCGGGCCTAACCATGGCAGACGATCTAACCT 670 Query 6935 CTGTCACCAAAAA 6947 ||||||||||| Sbjct 671 AAGTCACCAAAAA 683 >seq115841 Length=1175 Score = 86.0 bits (94), Expect = 5e-13 Identities = 134/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 6759 AAGAAGATCTCTGGTGATCGGGTTGAAGGGGAAGGAAAGGGAGATCAAGAAGAATGGGAG 6818 ||||||| || ||| || ||| | |||||||||||| |||| |||||||| | ||||| Sbjct 913 AAGAAGACCT--GGTCATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAGAAGGAGGGGAG 970 Query 6819 GTTCTTCGCACTCATGTCCTGGGACCTTCGGG--AGTACTTTGTATCCACTGAATATCTT 6876 || ||| | ||||||| ||| || | | | ||||||| || || || || || || Sbjct 971 ATTTTTCTCCCTCATGTTATGGAACTTAAGAGACAGTACTTCGTGTCGACCGAGTACCTC 1030 Query 6877 ATTAAAATGTTCTATGTCCCTTTGTTCCAAGGTCTGACCATGGCGGATGATCTGAACTCT 6936 || || | | ||||| || | ||| || | || |||||||| ||| ||| | Sbjct 1031 ATCAAGGAGCTGTATGTTCCGCTCTTCTCTGGATTAACAATGGCGGACGATTTGACCAAA 1090 Query 6937 GTCACCAAAA 6946 || ||||||| Sbjct 1091 GTGACCAAAA 1100 >seq200647 Length=1029 Score = 78.8 bits (86), Expect = 7e-11 Identities = 91/122 (75%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 6820 TTCTTCGCACTCATGTCCTGGGACCTTCGGGAGTACTTTGTATCCACTGAATATCTTATT 6879 || ||| | || ||||||||| | || || | |||||||||||||| ||| ||||||| Sbjct 910 TTTTTCTCGCTGATGTCCTGGAAACTACGAGCGTACTTTGTATCCAAGGAACATCTTATC 969 Query 6880 AAAATGTTCTATGTCCCTTTGTTCCAAGGTCTGACCATGGCGGATGATCTGAACTCTGTC 6939 || | ||| || || ||||| | || || ||||||||||| ||||| | || ||| Sbjct 970 AAGAAGTTATACGT--TTTTGTCCTCGGGCCTAACCATGGCGGACGATCTAACCTAAGTC 1027 Query 6940 AC 6941 || Sbjct 1028 AC 1029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37625346686416