Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18]
369,492 sequences; 1,765,382,190 total letters
Query= NC_031079.1
Length=11843
Score E
Sequences producing significant alignments: (Bits) Value
seq176488 158 9e-35
seq90283 140 2e-29
seq133769 131 1e-26
seq49187 125 5e-25
seq283927 104 2e-18
seq268548 89.7 4e-14
seq115841 86.0 5e-13
seq200647 78.8 7e-11
>seq176488
Length=2532
Score = 158 bits (174), Expect = 9e-35
Identities = 414/626 (66%), Gaps = 8/626 (1%)
Strand=Plus/Minus
Query 6739 ATCAATGACGTTGGCTTACCAA--GAAGATCTCTGGTGATCGGGTTGAAGGGGAAGGAAA 6796
||||||||| ||| | || | ||||| || || | || || ||||| |||||||| |
Sbjct 663 ATCAATGACAAGGGCCTCCCCAAGGAAGA-CT-TGATCATTGGCTTGAAAGGGAAGGAGA 606
Query 6797 GGGAGATCAAGAAGAATGGGAGGTTCTTCGCACTCATGTCCTGGGACCTTCGGGAGTACT 6856
| || | ||||| | || |||||| | |||||||| ||| | | || | ||||
Sbjct 605 GAGAAGTAAAGAAAGAGAGGCAATTCTTCTCCCTCATGTCTTGGAAGTTAAGGCAATACT 546
Query 6857 TTGTATCCACTGAATATCTTATTAAAATGTTCTATGTCCCTTTGTTCCAAGGTCTGACCA 6916
|||| || || ||| ||||||| ||| || || || || ||||| | || || || |
Sbjct 545 TTGTCTCAACAGAACATCTTATAAAAGAATTGTACGTGCCACTGTTCAACGGACTCACGA 486
Query 6917 TGGCGGATGATCTGAACTCTGTCACCAAAAAGATCCTTGGGTGCACCTTCGGTCAAGGGC 6976
|||| ||||| || | || || || || | || | | | || |||||| |
Sbjct 485 TGGCAGATGACCTCACAAAGGTTACAAAGAAACTTCTCGACAGTTCTTTACATCAAGGAC 426
Query 6977 TTGCAGGGTACACTGCAGTTACATTCACTAACCACCTAGATTACGAAAAGTGGAACAACC 7036
| | ||| | | || | | ||||| | |||||| | || ||||| ||||
Sbjct 425 AAACTGATTACTCCTCCATTTGTGTGGCCAACCATGTTGATTACCAGAAATGGAATAACC 366
Query 7037 ATCAGAGGCGGGAGGCCACTGACCCGGTTTTCAGAGTGATGGGTCAGTTCTTTGGACTTC 7096
|||| | | ||||| |||| || ||| |||||||||||||||| | || || |
Sbjct 365 ATCAACGTGGTTTGGCCAACAACCCTGTCTTCCGAGTGATGGGTCAGTTTGTGGGTCTGC 306
Query 7097 CTGAGCTGTTTGTCCGCACCCACGAGTTCTTCCAGAAGAGTCTGATCTATTACGGAGAAA 7156
| || || || ||| | || |||||||||||| |||| ||||| |||||||| ||| |
Sbjct 305 CAGAACTTTTCGTCAGAACGCACGAGTTCTTCGAGAACAGTCTCATCTATTATGGACCTA 246
Query 7157 GACCAGACCTGATGCAAGTGGTGGACGGAAAAGTTTCATCCATCGGCGATACTATGGTGG 7216
|||| || | ||| |||| | || | | || ||| | | ||| ||
Sbjct 245 GACCTGATTTAATGGAAGT--ACAAGGGGACACCTTGATCAGTAAAGCAAGTTATCCTGT 188
Query 7217 C--ATGGGAAGGACAAGAAGGAGGGTTGGAGGGGTTGAGACAAAAGGGATGGAGTGTCCT 7274
| |||||||| || |||| || | ||||| ||||||||||| || |||||| | |
Sbjct 187 CTGTTGGGAAGGCCAGAAAGGGGGTCTCGAGGGTTTGAGACAAAAAGGGTGGAGTATTGT 128
Query 7275 TAACCTCTTAGTCATTCTCCGGGAGGCACTGATCAGAAACACCCAGGTTCTGACCCTTGC 7334
|| | | || | | || || || || | |||| |||| || |||||| ||
Sbjct 127 GAATTTGCTCGTGCTCTTGCGAGAAGCTAAGACCCGAAATACCCTTGTCAAGACCCTAGC 68
Query 7335 TCAGGGAGACAACCAAGTAATCTGTA 7360
||||| |||||||| || || ||||
Sbjct 67 ACAGGGGGACAACCAGGTGATATGTA 42
>seq90283
Length=1560
Score = 140 bits (154), Expect = 2e-29
Identities = 410/619 (66%), Gaps = 12/619 (2%)
Strand=Plus/Plus
Query 6759 AAGAAGATCTCTGGTGATCGGGTTGAAGGGGAAGGAAAGGGAGATCAAGAAGAATGGGAG 6818
||||||| || ||| || ||| | |||||||||||| |||| |||||||| | |||||
Sbjct 225 AAGAAGACCT--GGTCATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAGAAGGAGGGGAG 282
Query 6819 GTTCTTCGCACTCATGTCCTGGGACCTTCGGG--AGTACTTTGTATCCACTGAATATCTT 6876
|| ||| | ||||||| ||| || | | | ||||||| || || || || || ||
Sbjct 283 ATTTTTCTCCCTCATGTTATGGAACTTAAGAGACAGTACTTCGTGTCGACCGAGTACCTC 342
Query 6877 ATTAAAATGTTCTATGTCCCTTTGTTCCAAGGTCTGACCATGGCGGATGATCTGAACTCT 6936
|| || | | ||||| || | ||| || | || |||||||| ||| ||| |
Sbjct 343 ATCAAGGAGCTGTATGTTCCGCTCTTCTCTGGATTAACAATGGCGGACGATTTGACCAAA 402
Query 6937 GTCACCAAAAAGATCCTTGGGTGCACCTTCGGTCAAGGGCTTGCAGGGTAC-ACTGCAGT 6995
|| ||||||||| | || | || || |||||| | | ||| ||| || |
Sbjct 403 GTGACCAAAAAGTTACTGGATAATTCCATCAATCAAGGATCAGATGACTACAACTCCA-T 461
Query 6996 TACATTCACTAACCACCTAGATTACGAAAAGTGGAACAACCATCAGAGGCGGGAGGCCAC 7055
| | | | ||||| |||| || ||||| ||||||||||| |||||| | | || |
Sbjct 462 TTCTCTTGCAAACCATATAGACTATGAAAAATGGAACAACCACCAGAGGGGAGCAGCTAA 521
Query 7056 TGACCCGGTTTTCAGAGTGATGGGTCAGTTCTTTGGACTTCCTGAGCTGTTTGTCCGCAC 7115
|| || | ||| ||||| ||||| || ||| | || | | ||| ||||||| | ||
Sbjct 522 CGATCCAGCTTTAAGAGTCATGGGACAATTCATCGGTTTACTAGAGTTGTTTGTTCAAAC 581
Query 7116 CCACGAGTTCTTCCAGAAG-AGTCTGATCTATTACGGAGAAAGACCAGACCTGATGCAAG 7174
||||||||||| || | || || |||| |||||| | || ||| | ||| |||
Sbjct 582 ACACGAGTTCTT-TGGAGGCAGCCTTGTCTACTACGGACCCCGTCCTGACTTAATGGAAG 640
Query 7175 T-GGTGGACGGAAAAGTTTCATCCATCGGCGATACTATGGTGGCATGGGAAGGACAAGAA 7233
| | |||| | | | | | || | | || || ||| | ||||
Sbjct 641 TAGATGGAGAGTCACTACGGAACAAAGGGAACTTCCCTGTCTGC-TGGAAGAGACAGCTC 699
Query 7234 GGAGGGTTGGAGGGGTTGAGACAAAAGGGATGGAGTGTCCTTAACCTCTTAGTCATTCTC 7293
||||| ||||| || | ||||||| || ||||| | | || || || ||| | |
Sbjct 700 GGAGGCTTGGAAGGTCTCCGACAAAAAGGTTGGAGCATTGTAAATCTATTGGTCCTCCCG 759
Query 7294 CGGGAGGCACTGATCAGAAACACCCAGGTTCTGACCCTTGCTCAGGGAGACAACCAAGTA 7353
| || || || ||||||||| |||| ||||| | |||||||||||||||||
Sbjct 760 CACGAAGCCAAGAGTAGAAACACCATGGTTAAAACCCTCGTGAAGGGAGACAACCAAGTA 819
Query 7354 ATCTG-TACTCAGTACAAG 7371
|| || |||| |||||||
Sbjct 820 ATATGCAACTC-GTACAAG 837
>seq133769
Length=136818
Score = 131 bits (144), Expect = 1e-26
Identities = 384/587 (65%), Gaps = 6/587 (1%)
Strand=Plus/Minus
Query 6775 ATCGGGTTGAAGGGGAAGGAAAGGGAGATCAAGAAGAATGGGAGGTTCTTCGCACTCATG 6834
||||| ||||||| || || || ||| | ||||| | || | || ||| | ||||||
Sbjct 122639 ATCGGACTGAAGGGAAAAGAGAGAGAGGTGAAGAAAGAGGGTCGATTTTTCTCTCTCATG 122580
Query 6835 TCCTGGGACCTTCGGGAGTACTTTGTATCCACTGAATATCTTATTAAAATGTTCTATGTC 6894
|| ||| | | || | |||||||| || || ||| |||| || ||| ||| |||||
Sbjct 122579 TCGTGGAAGTTACGACAATACTTTGTCTCAACAGAACATCTCATAAAAGAGTTGTATGTA 122520
Query 6895 CCTTTGTTCCAAGGTCTGACCATGGCGGATGATCTGAACTCTGTCACCAAAAAGATCCTT 6954
|| |||| || || || |||||||| || || | || || || || | ||
Sbjct 122519 CCACTGTTTAGTGGACTTACAATGGCGGACGACCTCACAAAAGTTACAAAGAAACTTCTC 122460
Query 6955 GGGTGCACCTTCGGTCAAGGGCTTGCAGGGTACACTGCAGTTACATTCACTAACCACCTA 7014
| | | || |||||| | ||| ||| | | || | | ||||| |
Sbjct 122459 GACAGTTCTTTACATCAAGGACGAACAGACTACTCATCCATTTGTGTAGCCAACCATGTT 122400
Query 7015 GATTACGAAAAGTGGAACAACCATCAGAGGCGGGAGGCCACTGACCCGGTTTTCAGAGTG 7074
|||||| ||||||||||||| ||||| | | ||| | | | || ||||||||
Sbjct 122399 GATTACCAAAAGTGGAACAATCATCAACGTGGTTCGGCTAACAATACTGTCTTCAGAGTC 122340
Query 7075 ATGGGTCAGTTCTTTGGACTTCCTGAGCTGTTTGTCCGCACCCACGAGTTCTTCCAGAAG 7134
||||||||||| | ||||| || || || || || | || || ||||||||| ||||
Sbjct 122339 ATGGGTCAGTTTGTGGGACTACCAGAACTTTTCGTGAGAACGCATGAGTTCTTCGAGAAC 122280
Query 7135 AGTCTGATCTATTACGGAGAAAGACCAGACCTGATGCAAGTGGTGGACGGAAAAGTTTCA 7194
||||| |||| || ||| ||||| || | ||| | || | || | | ||| |
Sbjct 122279 AGTCTTGTCTACTATGGACCCAGACCGGATTTAATGGACATG--CAAGGGGATACTTTGA 122222
Query 7195 TCCATCGGCG-ATACTAT--GGTGGCATGGGAAGGACAAGAAGGAGGGTTGGAGGGGTTG 7251
| | | | | ||||| || |||||||||||| ||||||| | || || |
Sbjct 122221 T-TAGCAAAGCAGACTATCCCGTATGCTGGGAAGGACAAAAAGGAGGTCTCGAAGGCCTA 122163
Query 7252 AGACAAAAGGGATGGAGTGTCCTTAACCTCTTAGTCATTCTCCGGGAGGCACTGATCAGA 7311
||||||||||| ||||| | | || || | || | || || |||||| | | |
Sbjct 122162 AGACAAAAGGGGTGGAGCATTGTAAATCTTCTCGTACTCCTGCGAGAGGCAAAAACCCGT 122103
Query 7312 AACACCCAGGTTCTGACCCTTGCTCAGGGAGACAACCAAGTAATCTG 7358
||||| ||| || | || || || ||||||||||| |||||
Sbjct 122102 AACACTTTAGTTAAAACATTAGCGCAAGGGGACAACCAAGTGATCTG 122056
>seq49187
Length=20191
Score = 125 bits (138), Expect = 5e-25
Identities = 250/364 (69%), Gaps = 10/364 (3%)
Strand=Plus/Plus
Query 6769 CTGGTGATCGGGTTGAAGGGGAAGGAAAGGGAGATCAAGAAGAATGGGAGGTTCTTCGCA 6828
||| | |||||| | || | |||||||| || | ||||| | | || |||||| |
Sbjct 6352 CTGATAATCGGGCTCAAAGTAAAGGAAAGAGAAGTAAAGAAAGAGGAAAGATTCTTCTCG 6411
Query 6829 CTCATGTCCTGGGACCTTCGGGAGTACTTTGTATCCACTGAATATCTTATTAAAAT-GTT 6887
|||||||| ||| | || || | |||| || | || || | |||| |||| |||
Sbjct 6412 CTCATGTCGTGGAATCTGAGGCAATACTCCGTCACAACAGAGCA-CTTAATAAAGGAGTT 6470
Query 6888 CTATGTCCCTTTGTTCCAAGGTCTGACCATGGCGGATGATCTGAACTCTGTCACCAAAAA 6947
|||||| || | ||| || |||| ||||| |||||||||| || || || ||
Sbjct 6471 CTATGTGCCCCTTTTCTCGGGATTGACTATGGCTGATGATCTGACTAAGGTGACAAAGAA 6530
Query 6948 GATCCTTGGGTGCACCTTCGGTCAAGGGCTTGCAGGGTAC----ACTGCAGTTACATTCA 7003
|||| | | | || ||||||| | | ||| ||| || || | |
Sbjct 6531 ACTCCTAGATAGTTCGATCAACCAAGGGCA-GAAT--TACTATAACTCCATTT-CTCTGG 6586
Query 7004 CTAACCACCTAGATTACGAAAAGTGGAACAACCATCAGAGGCGGGAGGCCACTGACCCGG 7063
| || ||| ||||||| ||||| ||||| ||||||||| || ||||||| | | || |
Sbjct 6587 CAAATCACGTAGATTATGAAAAATGGAATAACCATCAGCGGGGGGAGGCGAATAGTCCTG 6646
Query 7064 TTTTCAGAGTGATGGGTCAGTTCTTTGGACTTCCTGAGCTGTTTGTCCGCACCCACGAGT 7123
| ||| |||| |||||||||||| | || | ||||||||||| || ||||| || ||||
Sbjct 6647 TGTTCCGAGTAATGGGTCAGTTCCTAGGTTTGCCTGAGCTGTTCGTTCGCACTCATGAGT 6706
Query 7124 TCTT 7127
||||
Sbjct 6707 TCTT 6710
>seq283927
Length=152763
Score = 104 bits (114), Expect = 2e-18
Identities = 276/414 (67%), Gaps = 12/414 (3%)
Strand=Plus/Minus
Query 6760 AGAAGATCTCTGGTGATCGGGTTGAAGGGGAAGGAAAGGGAGATCAAGAAGAATGGGAGG 6819
||| |||||| | || || || || || |||||| | || ||||||||| | || ||
Sbjct 1669 AGATGATCTCA--TCATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAAGGAAGA 1612
Query 6820 TTCTTCGCACTCATGTCCTGGGACCTTCGGGAGTACTTTGTATCCACTGAATATCTTATT 6879
|||||| | || ||||||||| | |||| | || || || || ||| | || |
Sbjct 1611 TTCTTCTCCCTAATGTCCTGGAATCTTCAACAATATTTCGTCATTACAGAA-ACCTACTA 1553
Query 6880 AAAATGTTCTATGTCCCTTTGTTCCAAGGTCTGACCATGGCGGATGATCTGAACTCTGTC 6939
|| ||||| | || | || ||| || |||||||| || || ||| |||
Sbjct 1552 AAGGAATTCTACATACCCCTATTTGCAGGACTCACCATGGCAGACGACTTGATGGAAGTC 1493
Query 6940 ACCAAAAAGATCCTTGGG--TGCACCTTCGGTCAAGGGCTTGCAGGGTAC-ACTGCAGTT 6996
| |||||| | | | | |||| || ||||||| | | ||| | | | |
Sbjct 1492 GCAAAAAAGTTGTTAGACAATTCACCG--GGACAAGGGCAGGACGATTACCAATTGATTA 1435
Query 6997 ACATTCACTAACCACCTAGATTACGAAAAGTGGAACAACCATCAGAGGCGGGAGGCCACT 7056
|||| | ||||| | ||||||||||| ||||| || || || | | || || |
Sbjct 1434 CCATTGCC-AACCATATCGATTACGAAAAATGGAATAATCACCAAA---GAGATGCTAAC 1379
Query 7057 GACCCGGTTTTCAGAGTGATGGGTCAGTTCTTTGGACTTCCTGAGCTGTTTGTCCGCACC 7116
||||||| ||||| |||||||| || ||||| ||||| || | |||| ||||||
Sbjct 1378 AACCCGGTGTTCAGCGTGATGGGGCAATTCTTGGGACTGCCAAACTTGTTAACTCGCACC 1319
Query 7117 CACGAGTTCTTCCAGAAGAGTCTGATCTATTACGGAGAAAGACCAGACCTGATG 7170
||| | ||||| | || ||| | || ||||||||| | | || |||||||||
Sbjct 1318 CACAAATTCTTTGAAAACAGTTTAATTTATTACGGACCACGTCCGGACCTGATG 1265
>seq268548
Length=41840
Score = 89.7 bits (98), Expect = 4e-14
Identities = 100/133 (75%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 6815 GGAGGTTCTTCGCACTCATGTCCTGGGACCTTCGGGAGTACTTTGTATCCACTGAATATC 6874
|||| || ||| | || ||||||||| | || || | ||||||||||||||| ||| |||
Sbjct 553 GGAGATTTTTCTCGCTGATGTCCTGGAAACTACGAGTGTACTTTGTATCCACGGAACATC 612
Query 6875 TTATTAAAATGTTCTATGTCCCTTTGTTCCAAGGTCTGACCATGGCGGATGATCTGAACT 6934
| || || | ||| || || ||||| | || || |||||||| || ||||| | ||
Sbjct 613 TCATCAAGAAGTTATACGT--TTTTGTCCTCGGGCCTAACCATGGCAGACGATCTAACCT 670
Query 6935 CTGTCACCAAAAA 6947
|||||||||||
Sbjct 671 AAGTCACCAAAAA 683
>seq115841
Length=1175
Score = 86.0 bits (94), Expect = 5e-13
Identities = 134/190 (71%), Gaps = 4/190 (2%)
Strand=Plus/Plus
Query 6759 AAGAAGATCTCTGGTGATCGGGTTGAAGGGGAAGGAAAGGGAGATCAAGAAGAATGGGAG 6818
||||||| || ||| || ||| | |||||||||||| |||| |||||||| | |||||
Sbjct 913 AAGAAGACCT--GGTCATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAGAAGGAGGGGAG 970
Query 6819 GTTCTTCGCACTCATGTCCTGGGACCTTCGGG--AGTACTTTGTATCCACTGAATATCTT 6876
|| ||| | ||||||| ||| || | | | ||||||| || || || || || ||
Sbjct 971 ATTTTTCTCCCTCATGTTATGGAACTTAAGAGACAGTACTTCGTGTCGACCGAGTACCTC 1030
Query 6877 ATTAAAATGTTCTATGTCCCTTTGTTCCAAGGTCTGACCATGGCGGATGATCTGAACTCT 6936
|| || | | ||||| || | ||| || | || |||||||| ||| ||| |
Sbjct 1031 ATCAAGGAGCTGTATGTTCCGCTCTTCTCTGGATTAACAATGGCGGACGATTTGACCAAA 1090
Query 6937 GTCACCAAAA 6946
|| |||||||
Sbjct 1091 GTGACCAAAA 1100
>seq200647
Length=1029
Score = 78.8 bits (86), Expect = 7e-11
Identities = 91/122 (75%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 6820 TTCTTCGCACTCATGTCCTGGGACCTTCGGGAGTACTTTGTATCCACTGAATATCTTATT 6879
|| ||| | || ||||||||| | || || | |||||||||||||| ||| |||||||
Sbjct 910 TTTTTCTCGCTGATGTCCTGGAAACTACGAGCGTACTTTGTATCCAAGGAACATCTTATC 969
Query 6880 AAAATGTTCTATGTCCCTTTGTTCCAAGGTCTGACCATGGCGGATGATCTGAACTCTGTC 6939
|| | ||| || || ||||| | || || ||||||||||| ||||| | || |||
Sbjct 970 AAGAAGTTATACGT--TTTTGTCCTCGGGCCTAACCATGGCGGACGATCTAACCTAAGTC 1027
Query 6940 AC 6941
||
Sbjct 1028 AC 1029
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 37625346686416
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