Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_031083.1 Length=13169 Score E Sequences producing significant alignments: (Bits) Value seq214573 91.5 1e-14 seq90283 84.2 2e-12 >seq214573 Length=1580 Score = 91.5 bits (100), Expect = 1e-14 Identities = 179/257 (70%), Gaps = 11/257 (4%) Strand=Plus/Plus Query 9957 ACTGGTTTGTCAAACCGGATTCCAATG---TCGCGTGCAGCATTCTCAACAACTTGAAGG 10013 ||||||| |||||||| || ||| |||| |||||||| || ||| | | | Sbjct 301 ACTGGTTCGTCAAACCCGAAG---ATGGCATCGCAAAAAGCATTCTGAATAACCTCAGTG 357 Query 10014 CGCTAACGGGAGAAGACTGGACAGAGAGGGCCACA-GAGTATCAGCGGACGGGAAGTGCA 10072 | ||||| || ||||| ||| |||| | ||| | | ||| | || ||| || Sbjct 358 CCCTAACCGGGGAAGATTGGTCAGAAGAGATTACAAGTTTTTCAA-GAACAGGATCAGCC 416 Query 10073 CTTCACCGCTTCCACTGCTCACGGCAGAGTAGCGGAGGATTCACTTCGATAAGCCCTGCT 10132 ||||||| |||| ||||| | ||||||||| ||| |||||| ||| || || || | Sbjct 417 CTTCACCACTTCTACTGCACCAGGCAGAGTAACGGGGGATTCGTTTCCATGAGTCCGACA 476 Query 10133 G-TCTTGACCTACGTGATGGTGACTGCCGATAC-ATGCAAAGAGTTGTCTAAGGGGAATT 10190 | || || || |||| ||||| |||||||| ||| ||| | || || ||| |||| Sbjct 477 CCTTTTTACACACTTGATTGTGACAGCCGATACTATG-AAACAATTATCACGGGGAAATT 535 Query 10191 ACGACTTCATGTATCAA 10207 | || |||||||||||| Sbjct 536 ATGATTTCATGTATCAA 552 >seq90283 Length=1560 Score = 84.2 bits (92), Expect = 2e-12 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 8399 CCCGTTTGTTGGAACGGACAGGCAGGTGGACTGGAGGGACTGCGCCAAAAAGGTTGGAGC 8458 || || || ||||| ||||| || || |||| || || || ||||||||||||||| Sbjct 676 CCTGTCTGCTGGAAGAGACAGCTCGGAGGCTTGGAAGGTCTCCGACAAAAAGGTTGGAGC 735 Query 8459 ATTGTCAACCTCCTCGTCATCATGCGGGAAGGAAAGGTTCGAAATACACTCGTCCGCACC 8518 ||||| || || | ||| || || |||| ||| | |||| || | || ||| Sbjct 736 ATTGTAAATCTATTGGTCCTCCCGCACGAAGCCAAGAGTAGAAACACCATGGTTAAAACC 795 Query 8519 CTTGCGCAAGGGGACAATCAGGTCATATGTACCAGGTACAAGATCCCTACCTGCCCAACC 8578 || | | | || ||||| || || ||||| | | |||||||||||| || | | | ||| Sbjct 796 CTCGTGAAGGGAGACAACCAAGTAATATGCAACTCGTACAAGATCCCGACATCCACCACC 855 Query 8579 CCTGCTGAACT 8589 | ||||||| Sbjct 856 CAGTCTGAACT 866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41842869749072