Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_031215.1 Length=12291 Score E Sequences producing significant alignments: (Bits) Value seq90283 89.7 4e-14 >seq90283 Length=1560 Score = 89.7 bits (98), Expect = 4e-14 Identities = 270/411 (66%), Gaps = 6/411 (1%) Strand=Plus/Plus Query 7312 CTGATTATCGGGTTGAAAGAGAAGGAGAGAGAGATCAAAATTAACGGTCGTTTTTTCTCT 7371 ||| | || ||| | || | |||||| | || |||| | | || | |||||||| Sbjct 233 CTGGTCATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAGAAGGAGGGGAGATTTTTCTCC 292 Query 7372 CTGATGTCATGGGATTTGAGAGAT--TACTTTGTGATAACTGAATATCTAATCAAGACAC 7429 || |||| |||| | || ||||| ||||| ||| || || || || |||||| | Sbjct 293 CTCATGTTATGGAACTTAAGAGACAGTACTTCGTGTCGACCGAGTACCTCATCAAGGAGC 352 Query 7430 ATTTTGTCCCTCTTTTCTATGGTCTAACTATGGCCGATGATATGACGACCGTTGTGAGGA 7489 | ||| || || |||| ||| |||| ||||| || ||| |||| | || | | Sbjct 353 TGTATGTTCCGCTCTTCTCTGGATTAACAATGGCGGACGATTTGACCAAAGTGACCAAAA 412 Query 7490 AGATGATGGAGAATACTAGCGGTCAGGGCTCTGATGATTATGAACACATCGGAATTGCAA 7549 || | |||| ||| | | | ||| || || ||||| || | ||| |||||| Sbjct 413 AGTTACTGGATAATTCCATCAATCAAGGATCAGATGACTACAACTCCATTTCTCTTGCAA 472 Query 7550 ACCACCTTGATTACGAAAAATGGAACAACCATCAGA-GATATCAGTCCACTGAGCCGGTA 7608 |||| | || || ||||||||||||||||| |||| | | ||| | | || || | Sbjct 473 ACCATATAGACTATGAAAAATGGAACAACCACCAGAGGGGAGCAG-CTAACGATCCAGCT 531 Query 7609 TTTACGGTGATGGGAAAGTTTTTGGGTTATCCTA-ATTTGATTGCCAGGACCCATGAGTT 7667 || | || |||||| | || | |||| | ||| | ||| ||| || || ||||| Sbjct 532 TTAAGAGTCATGGGACAATTCATCGGTT-TACTAGAGTTGTTTGTTCAAACACACGAGTT 590 Query 7668 CTTTGAAAAGAGTTTTATCTATCACGGAGGCAGAGCAGATTTAATGAAAGT 7718 ||||| | || || |||| ||||| | | | || |||||| |||| Sbjct 591 CTTTGGAGGCAGCCTTGTCTACTACGGACCCCGTCCTGACTTAATGGAAGT 641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39052987519440