Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_031236.1 Length=11165 Score E Sequences producing significant alignments: (Bits) Value seq176488 120 2e-23 seq133769 91.5 1e-14 >seq176488 Length=2532 Score = 120 bits (132), Expect = 2e-23 Identities = 275/411 (67%), Gaps = 6/411 (1%) Strand=Plus/Minus Query 6238 TTGATCATTGGCCTTAAGGCGAAAGAGAGGGAACTAAAAGCACAGGGAAGATTCTTCTCC 6297 |||||||||||| | || | ||| ||||| ||| |||| | || | |||||||||| Sbjct 633 TTGATCATTGGCTTGAAAGGGAAGGAGAGAGAAGTAAAGAAAGAGAGGCAATTCTTCTCC 574 Query 6298 CTGCTTTCTTGGGTACTTAGAGAGTATTTTGTCGTAACGGAATATCTTAT-AAAGATCCA 6356 || | |||||| | || | || |||||| ||| ||| ||||||| ||||| | Sbjct 573 CTCATGTCTTGGAAGTTAAGGCAATACTTTGTCTCAACAGAACATCTTATAAAAGA---A 517 Query 6357 T--TTCCTCCCTCTTTTTAAGGGACTGACTATGGCTGATGACTTGACTACCCTCACCAAG 6414 | | | | || || || || ||||| || ||||| |||||| | || | | || ||| Sbjct 516 TTGTACGTGCCACTGTTCAACGGACTCACGATGGCAGATGACCTCACAAAGGTTACAAAG 457 Query 6415 AAGATGCTGGACACCTCCTCGGGTCAAGGGTTAAGTGGATACGACAAAATTAGTTATGCT 6474 || | || |||| || | |||||| || || ||| | ||| || || Sbjct 456 AAACTTCTCGACAGTTCTTTACATCAAGGACAAACTGATTACTCCTCCATTTGTGTGGCC 397 Query 6475 AACCATTTGGATTATGAGAAGTGGAACAATTATCAAAGGATTGAGTCCAACGGACCGGTC 6534 |||||| | ||||| |||| ||||| || ||||| | | | ||||| || ||| Sbjct 396 AACCATGTTGATTACCAGAAATGGAATAACCATCAACGTGGTTTGGCCAACAACCCTGTC 337 Query 6535 TTCAAAGTCATGGGACAGTTTCTGGGGTATCCAAATCTTATATATCGAACACATGAGTTC 6594 ||| ||| ||||| |||||| |||| ||| | ||| | |||| || |||||| Sbjct 336 TTCCGAGTGATGGGTCAGTTTGTGGGTCTGCCAGAACTTTTCGTCAGAACGCACGAGTTC 277 Query 6595 TTCCAGAAAAGCATCATTTACTACAATGATAGGCCGGATTTGATGGTAGTA 6645 ||| |||| || |||| || || ||| || ||||| |||| |||| Sbjct 276 TTCGAGAACAGTCTCATCTATTATGGACCTAGACCTGATTTAATGGAAGTA 226 >seq133769 Length=136818 Score = 91.5 bits (100), Expect = 1e-14 Identities = 270/408 (66%), Gaps = 10/408 (2%) Strand=Plus/Minus Query 6238 TTGATCATTGGCCTTAAGGCGAAAGAGAGGGAACTAAAAGCACAGGGAAGATTCTTCTCC 6297 || ||||| || || |||| |||||||| || | || | |||| |||| ||||| Sbjct 122645 TTAATCATCGGACTGAAGGGAAAAGAGAGAGAGGTGAAGAAAGAGGGTCGATTTTTCTCT 122586 Query 6298 CTGCTTTCTTGGGTACTTA-GAGAGTATTTTGTCGTAACGGAATATCTTATAAA-GATCC 6355 || | || ||| | ||| || | || |||||| ||| ||| |||| ||||| || Sbjct 122585 CTCATGTCGTGGA-AGTTACGACAATACTTTGTCTCAACAGAACATCTCATAAAAGAGTT 122527 Query 6356 ATTTCCTCCCTCTTTTTAAGGGACTGACTATGGCTGATGACTTGACTACCCTCACCAAGA 6415 | | | || || |||| ||||| || ||||| || ||| | || | | || |||| Sbjct 122526 GTATG-TACCACTGTTTAGTGGACTTACAATGGCGGACGACCTCACAAAAGTTACAAAGA 122468 Query 6416 AGATGCTGGACACCTCCTCGGGTCAAGGGTTAAGTGGATACGACAAAATTAGTTATGCTA 6475 | | || |||| || | |||||| || | ||| ||| || || | Sbjct 122467 AACTTCTCGACAGTTCTTTACATCAAGGACGAACAGACTACTCATCCATTTGTGTAGCCA 122408 Query 6476 ACCATTTGGATTATGAGAAGTGGAACAATTATCAAAGGATTGAGTCCAACGGACCGGTCT 6535 ||||| | ||||| | |||||||||||| ||||| | | | | ||| | |||| Sbjct 122407 ACCATGTTGATTACCAAAAGTGGAACAATCATCAACGTGGTTCGGCTAACAATACTGTCT 122348 Query 6536 TCAAAGTCATGGGACAGTTTCTGGGGTATCCAAATCTTATATATCGAACACATGAGTTCT 6595 ||| ||||||||| |||||| |||| ||| | ||| | |||| |||||||||| Sbjct 122347 TCAGAGTCATGGGTCAGTTTGTGGGACTACCAGAACTTTTCGTGAGAACGCATGAGTTCT 122288 Query 6596 TCCAGAAAAGCATCATTTACTACAATG---ATAGGCCGGATTTGATGG 6640 || |||| || || || |||| ||| || |||||||| |||| Sbjct 122287 TCGAGAACAG--TC-TTGTCTACTATGGACCCAGACCGGATTTAATGG 122243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35464765247152