Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_031240.1 Length=11541 Score E Sequences producing significant alignments: (Bits) Value seq133769 86.0 5e-13 seq90283 78.8 7e-11 >seq133769 Length=136818 Score = 86.0 bits (94), Expect = 5e-13 Identities = 140/200 (70%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 7135 AGGAACAGGGAAATTAGGACTAATTATTAATCACGATGAGACCATGAAAAGCACGGAATT 7194 ||||||| | ||| | ||| | | || || |||||||||||| ||||||| || || Sbjct 121953 AGGAACACGTAAACTGGGATTGCTAATCAACAGAGATGAGACCATGCAAAGCACTGATTT 121894 Query 7195 TCTGAATTATGGAAAA--ACCTGTGTCTTTAGGGGTAATATTAGGAATCTGGAAACAAAG 7252 |||| ||||| || ||| |||| | || || || || | | || ||||| Sbjct 121893 TCTGTCCTATGGCAAGGTACCAGTGT--TCAGAGGAAACATCCTACCTTTAGAGGCAAAG 121836 Query 7253 AGATGGTCTCGGGTAACTTGTGTAACAAATGATCAATTACCGACGATGGCTAATGTCTTA 7312 |||||||| || || || || ||||| |||||||||||||| | || | ||||| | Sbjct 121835 AGATGGTCACGAGTTACATGCGTAACCAATGATCAATTACCTTCTTTGTCCAATGTACTT 121776 Query 7313 TCAACAACTTCCAGCAATGC 7332 ||||| | ||| | ||||| Sbjct 121775 TCAACCATTTCAACAAATGC 121756 >seq90283 Length=1560 Score = 78.8 bits (86), Expect = 7e-11 Identities = 67/83 (81%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 6674 GCAGATCATATAGATTACGAAAAATGGAACAATCATCAGAGAGGAGAGGCAAATAATCCA 6733 ||| | |||||||| || |||||||||||||| || ||||| |||| || || ||||| Sbjct 469 GCAAACCATATAGACTATGAAAAATGGAACAACCACCAGAGGGGAGCAGCTAACGATCCA 528 Query 6734 ACTTTCAAAGTTATGGGACAATT 6756 |||| | ||| ||||||||||| Sbjct 529 GCTTTAAGAGTCATGGGACAATT 551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36662963803440