Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_031268.1 Length=8683 Score E Sequences producing significant alignments: (Bits) Value seq133769 194 9e-46 seq176488 125 4e-25 seq292816 104 1e-18 seq90283 100 2e-17 seq268548 78.8 5e-11 >seq133769 Length=136818 Score = 194 bits (214), Expect = 9e-46 Identities = 754/1169 (64%), Gaps = 32/1169 (3%) Strand=Plus/Minus Query 3102 TTCGATATCATCTTAGGTGAGA-CAGATTT-TAAACAAATTTTAATCTACTATGGTGTTT 3159 || ||||||||| | | |||| |||| | | |||| | ||| | |||||||| | Sbjct 123206 TTTGATATCATC--AAGCGAGAACAGAGTCCTCGACAAGTGTTACTTTACTATGGCTCAT 123149 Query 3160 TTCGCCATTGGGGCCATCCCTTCATTGACTATTTTGCGGGTCTGAAGAAGCTTCATGAAC 3219 | | |||||||||||||| ||| | || || | || || |||| || || || Sbjct 123148 TCAGACATTGGGGCCATCCATTCTTGGATTACCAAGATGGCCTCCAGAAACTACACACAC 123089 Query 3220 AAGTCCAAATGGAGAAAGACATCGATGAAGCCTATGCTGAATCCTTAGCAAGTGACTTGG 3279 |||| ||||||||||| || || || || |||||||||||| | |||||||| | | Sbjct 123088 AAGTTCAAATGGAGAAGGAGATAGACACAGACTATGCTGAATCACTGGCAAGTGATCTAG 123029 Query 3280 CTTACATCGTCCTCAAACACGAATTCGACCGACAGAAGAAGTGGTTCGTTGATGCAACCC 3339 | | ||| || | | | |||||| || ||| | ||||| || ||| | Sbjct 123028 CCTTCATGGTGTTGGAGAAAGAATTCCACACTCAGCGACAATGGTTTGTCGATTTGGACA 122969 Query 3340 AGATGGACATAAAGGATCCTCTGTACGAGCATGTGCGGAATTGCACCTGGCCCACTCCTC 3399 | ||| | | ||||||| || || |||||| | ||| || ||||| || |||| Sbjct 122968 AAATGAATCCACAGGATCCGATGACGGATCATGTGAGAAATCAAACATGGCCTACCCCTC 122909 Query 3400 AACAGATTCAAGACATAGGGGATCGGTGGCACAAACTACCTCTAAGGGCTTGTTATGAAA 3459 | || ||||| || || |||||| || || | | ||||| || | Sbjct 122908 TTGAAATCCAAGAGTACGGAGACAAGTGGCATCTTCTCCCATTGACAGCTTGCTACTCAG 122849 Query 3460 TCCCTCAAACAATCGACCCATCGGTTCTATTTGCTGACAAAAGTCACTCCCCGAACTATT 3519 | || ||||| || || || || ||||| | |||||| ||||| ||| |||| | Sbjct 122848 TGCCACAAACTATTGATCCCTCCGTTCTCTACAGTGACAAGAGTCATTCCATGAACCGTA 122789 Query 3520 CCGAAGTGTTCACTCACAT-TGCTTCAGGCAAGGAA----GAACCGATTCCTTCAAGAAA 3574 | || ||||| ||| || ||| ||| ||| |||||||| ||||| Sbjct 122788 CTGA--TGTTCTGAACCATGTGAGACAGTATCCGAATCGAGAA---ATTCCTTCCAGAAA 122734 Query 3575 GGTTCTGAAGACAGCCCTTGACACTCCCCATCGGAATCTAGTAGACTTTCTCCAAGAAGT 3634 ||||||| ||||| ||||| || || || || | ||| || | |||| | Sbjct 122733 AGTTCTGAGAACAGCTCTTGAGACCCCTCAAGTAAACATCAAAGAGTTCTTGGAAGAGAT 122674 Query 3635 AAATGACCATGGTCTTCCCAAGGATAGTCTCACT-ATTGGATTAAAGGGCAAGGAGCGAG 3693 |||||| | || || |||| || || || | | || ||| | ||||| || ||| ||| Sbjct 122673 CAATGACAAGGGCCTCCCCAGAGA-AGACTTAATCATCGGACTGAAGGGAAAAGAGAGAG 122615 Query 3694 AGTTAAAAGACGTGGGAAGATTTTTCTCTCTGATGACCTGGGATCTGAGAGAGTATTTTG 3753 || | || | | ||| ||||||||||||| ||| | ||| | | || | || |||| Sbjct 122614 AGGTGAAGAAAGAGGGTCGATTTTTCTCTCTCATGTCGTGGAAGTTACGACAATACTTTG 122555 Query 3754 TATCCACTGAGTACCTCATTAAGATGTATTATGTTCCCTTGTTTGAAGGACTCACCATGG 3813 | || || || | ||||| || || ||||| || ||||| ||||| || |||| Sbjct 122554 TCTCAACAGAACATCTCATAAAAGAGTTGTATGTACCACTGTTTAGTGGACTTACAATGG 122495 Query 3814 CAGATGATCTAAAATCTGTAACACGAAAGATACTGGAGTGTACCACTGGTCACGGTCAGA 3873 | || || || | | || ||| || | || || || | ||| || | || Sbjct 122494 CGGACGACCTCACAAAAGTTACAAAGAAACTTCTCGACAGTTCTTTACATCAAGGAC-GA 122436 Query 3874 TCGGTTACAAGGTAGTCAGC--TTTG-----CTAATCACTTAGACTATGAGAAATGGAAC 3926 | | || || ||| | |||| | || || | || || | || |||||| Sbjct 122435 ACAG--AC----TACTCATCCATTTGTGTAGCCAACCATGTTGATTACCAAAAGTGGAAC 122382 Query 3927 AATCATCAGAGGAAAAAGTCAACCTTCCCCGTCTTCAAGGTTATGGGTCAGTTCCTTGGG 3986 |||||||| | | | | | | ||||||| || ||||||||||| | || Sbjct 122381 AATCATCAACGTGGTTCGGCTAACAATACTGTCTTCAGAGTCATGGGTCAGTTTGTGGGA 122322 Query 3987 ATGCCAAACCTATTCGCTCAAACTCATGATTTCTTCGAACAGAGTTTTGTTTATTATGGT 4046 | ||| | || |||| ||| ||||| |||||||| | ||| |||| || ||||| Sbjct 122321 CTACCAGAACTTTTCGTGAGAACGCATGAGTTCTTCGAGAACAGTCTTGTCTACTATGGA 122262 Query 4047 GAACGTCCTGATCTTATGACTGTTCAAGGAGGAAAGATCG-TGAACAATACAGAACATAT 4105 | || ||| | ||| | ||||| ||| | | | | | ||| |||| || Sbjct 122261 CCCAGACCGGATTTAATGGACATGCAAGG-GGATACTTTGATTAGCAAAGCAGACTATCC 122203 Query 4106 TGTATGTTGGAACGGTCAACTGGGCGGACTTGAAGGACTACGACAAAAGGGATGGAGCGT 4165 ||||| ||| | || ||| || || || ||||| ||| |||||||||| |||||| | Sbjct 122202 CGTATGCTGGGAAGGACAAAAAGGAGGTCTCGAAGGCCTAAGACAAAAGGGGTGGAGCAT 122143 Query 4166 CCTCAATCTTCTCGTCATCCTACGAGAGTCGAAGATCCGCAACACCCAAGTCAGAGTGCT 4225 | ||||||||||| |||| |||||| | || | ||| ||||| ||| | | | Sbjct 122142 TGTAAATCTTCTCGTACTCCTGCGAGAGGCAAAAACCCGTAACACTTTAGTTAAAACATT 122083 Query 4226 TGCTCAAGGTGACAACCAAGTGATTTGCA 4254 || ||||| |||||||||||||| |||| Sbjct 122082 AGCGCAAGGGGACAACCAAGTGATCTGCA 122054 >seq176488 Length=2532 Score = 125 bits (138), Expect = 4e-25 Identities = 699/1104 (63%), Gaps = 20/1104 (2%) Strand=Plus/Minus Query 3159 TTTCGCCATTGGGGCCATCCCTTCATTGACTATTTTGCGGGTCTGAAGAAGCTTCATGAA 3218 ||| | || ||||| || || ||| | ||||| | || || | ||| | || | Sbjct 1137 TTTAGACACTGGGGTCACCCGTTCCTCGACTACCAAGATGGCCTTCAAAAGTTGCACACA 1078 Query 3219 CAAGTCCAAATGGAGAAAGACATCGATGAAGCCTATGCTGAATCCTTAGCAAGTGACTTG 3278 |||||||| ||||| || || || ||| | |||||| | ||| | |||||||| | Sbjct 1077 CAAGTCCAGATGGAAAAGGAGATAGATACCGACTATGCAAACTCCCTGGCAAGTGATCTA 1018 Query 3279 GCTTACATCGTCCTCAAACACGAATTCGACCGACAGAAGAAGTGGTTCGTTGATGCAACC 3338 || | || || | || | || ||| || |||| | |||||||| || | | Sbjct 1017 GCCTTTATGGTATTAGAAAAAGAGTTCCACACTCAGAGACAATGGTTCGTCGACTTAGAC 958 Query 3339 CAGATGGACATAAAGGATCCTCTGTACGAGCATGTGCGGAATTGCACCTGGCCCACTCCT 3398 ||||| || | || || || || ||||| || || || ||||| || || Sbjct 957 AAGATGAACCCGCAAGACCCCATGACAGACCATGTACGCAACCAGACATGGCCTACACCA 898 Query 3399 CAACAGATTCAAGACATAGGGGATCGGTGGCACAAACTACCTCTAAGGGCTTGTTATGAA 3458 | | |||||||| |||||||| ||||| || || |||| ||||| || | Sbjct 897 CTTGAAATTCAAGAGTACGGGGATCGATGGCATCTCCTTCCACTAACAGCTTGCTACTCA 838 Query 3459 ATCCCTCAAACAATCGACCCATCGGTTCTATTTGCTGACAAAAGTCACTCCCCGAACTAT 3518 | || || || || || || || ||||| | ||| || ||||| ||| || | | Sbjct 837 GTGCCGCAGACCATTGATCCCTCTGTTCTCTACAGTGATAAGAGTCATTCCATGAGC-AG 779 Query 3519 TCCGAAGTGTTCACTCACATTGCTTCAGGCAAG----GAAGA-ACCGATTCCTTCAAGAA 3573 | || ||| | | || || | || || ||| | | ||| ||||| | | Sbjct 778 GACTAA-TGTCCT-TAACCATG--TAAGACAGTATCCGAACAGAGAGATCCCTTCCCGGA 723 Query 3574 AGGTTCTGAAGACAGCCCTTGACACTCCCCATCGGAATCTAGTAGACTTTCTCCAAGAAG 3633 | || ||| |||||| ||||| || || || ||| | ||| |||||| |||| Sbjct 722 AAGTGTTGAGGACAGCACTTGAGACCCCTCAGGTCAATATCAAAGAGTTTCTCGAAGAGA 663 Query 3634 TAAATGACCATGGTCTTCCCAAGGATAGTCTCACT-ATTGGATTAAAGGGCAAGGAGCGA 3692 | |||||| | || || |||||||| || || | ||||| || || || |||||| || Sbjct 662 TCAATGACAAGGGCCTCCCCAAGGA-AGACTTGATCATTGGCTTGAAAGGGAAGGAGAGA 604 Query 3693 GAGTTAAAAGACGTGGGAAGATTTTTCTCTCTGATGACCTGGGATCTGAGAGAGTATTTT 3752 || |||| | | | | ||| ||||| || ||| | ||| | | || | || ||| Sbjct 603 GAAGTAAAGAAAGAGAGGCAATTCTTCTCCCTCATGTCTTGGAAGTTAAGGCAATACTTT 544 Query 3753 GTATCCACTGAGTACCTCATTAAGATGTATTATGTTCCCTTGTTTGAAGGACTCACCATG 3812 || || || || | || || || | || || || |||| | |||||||| ||| Sbjct 543 GTCTCAACAGAACATCTTATAAAAGAATTGTACGTGCCACTGTTCAACGGACTCACGATG 484 Query 3813 GCAGATGATCTAAAATCTGTAACACGAAAGATACTGGAGTGTACCACTGGTCACGGTCAG 3872 |||||||| || | | || ||| || | || || || | ||| || || Sbjct 483 GCAGATGACCTCACAAAGGTTACAAAGAAACTTCTCGACAGTTCTTTACATCAAGGACAA 424 Query 3873 ATCGGTTACAAGGTAGTCAGCTTTGCTAATCACTTAGACTATGAGAAATGGAACAATCAT 3932 | | |||| | | | || || || | || || |||||||||| || ||| Sbjct 423 ACTGATTACTCCTCCATTTGTGTGGCCAACCATGTTGATTACCAGAAATGGAATAACCAT 364 Query 3933 CAGAGGAAAAAGTCAACCTTCCCCGTCTTCAAGGTTATGGGTCAGTTCCTTGGGATGCCA 3992 || | | | | | ||| |||||| || ||||||||||| | || ||||| Sbjct 363 CAACGTGGTTTGGCCAACAACCCTGTCTTCCGAGTGATGGGTCAGTTTGTGGGTCTGCCA 304 Query 3993 AACCTATTCGCTCA-AACTCATGATTTCTTCGAACAGAGTTTTGTTTATTATGGTGAACG 4051 | || |||| ||| ||| || || |||||||| | ||| | | |||||||| | Sbjct 303 GAACTTTTCG-TCAGAACGCACGAGTTCTTCGAGAACAGTCTCATCTATTATGGACCTAG 245 Query 4052 TCCTGATCTTATGACTGTTCAAGGAGGAAAGATCGTGAACAATACAG-AACATAT--TGT 4108 |||||| | ||| || ||||| | | | | ||| || || || || ||| ||| Sbjct 244 ACCTGATTTAATGGAAGTACAAGGGG---ACACCTTGATCAGTAAAGCAAGTTATCCTGT 188 Query 4109 ATGTTGGAACGGTCAACTGGGCGGACTTGAAGGACTACGACAAAAGGGATGGAGCGTCCT 4168 |||||| | || || || || || || || | ||||||| || ||||| | | Sbjct 187 CTGTTGGGAAGGCCAGAAAGGGGGTCTCGAGGGTTTGAGACAAAAAGGGTGGAGTATTGT 128 Query 4169 CAATCTTCTCGTCATCCTACGAGAGTCGAAGATCCGCAACACCCAAGTCAGAGTGCTTGC 4228 ||| | ||||| || | ||||| | |||| ||| || |||| |||| || || Sbjct 127 GAATTTGCTCGTGCTCTTGCGAGAAGCTAAGACCCGAAATACCCTTGTCAAGACCCTAGC 68 Query 4229 TCAAGGTGACAACCAAGTGATTTG 4252 || || |||||||| ||||| || Sbjct 67 ACAGGGGGACAACCAGGTGATATG 44 >seq292816 Length=4775 Score = 104 bits (114), Expect = 1e-18 Identities = 403/621 (65%), Gaps = 17/621 (3%) Strand=Plus/Minus Query 3211 TTCATGAACAAGTCCAAATGGAGAAAGACATCGA--TGAAGCCTATGCTGAATCCTTAGC 3268 || ||| || ||||| |||| ||||||||||| || || ||||| || | |||| Sbjct 2209 TTAATGCCCAGGTCCAGCTGGAAAAAGACATCGACCTGGAG--TATGCAGACGCTCTAGC 2152 Query 3269 AAGTGACTTGGCTTACATCGTCCTCAAACACGAATTCGACCGACAGAAGAAGTGGTTCGT 3328 ||| || | ||||| || | | || | || || || ||||||||||| Sbjct 2151 AAGCGATCTTGCTTATATGATATTGGAAAAAGAGTTTTTTGCTCAACGTAAGTGGTTCGT 2092 Query 3329 TGATGCAACCCAGATGGACATAAAGGATCCTCTGTACGAGCATGTGCGGAATTGCACCTG 3388 ||| | | | |||| | | | || ||||| | | ||||| |||| ||| || Sbjct 2091 GGATCCTGACAAAATGGGCCTGACAGACCCTCTTCGCAAACATGTCATGAATGTCACATG 2032 Query 3389 GCCCACTCCTCAACAGATTCAAGACATAGGGGATCGGTGGCACAAACTACCTCTAAGGGC 3448 ||||||||| | |||||| || | ||| ||| |||| ||| || || | Sbjct 2031 GCCCACTCCACTTGAGATTCGGGAGTATGAGGACAAGTGACACAGACTTCCCCTCTTACC 1972 Query 3449 TTGTTATGAAATCCCTCAAACAATCGACCCATCGGTTCTATTTGCTGACAAAAGTCACTC 3508 ||| || | || |||||||| || || | || || | |||| ||| ||||| Sbjct 1971 TTGCTACAGCGTACCACAAACAATTGATCCCGCTGTCCTTTACAACGACAGAAGCCACTC 1912 Query 3509 CCCGAACTATTCCGAAGTGTTCACTCACATT--GCTTCAGGCAAGGAAGAACCGATTCCT 3566 | |||| || ||||| | | | || | | | | ||| || ||||| Sbjct 1911 CATGAACCGATCAGAAGTACTGGCCCCTGTTTGGAATTACCC--GGATAAAGAAATTCCA 1854 Query 3567 TCAAGAAAGGTTCTGAAGACAGCCCTTGACACTCCCCATCGGAA--TCTAGTAGACTTTC 3624 ||||||||||| |||||||||||| | || || || || ||| || || | ||||| Sbjct 1853 TCAAGAAAGGTACTGAAGACAGCCTTAGAAACACCTCAAGTGAACGTCAAGAA--CTTTC 1796 Query 3625 TCCAAGAAGTAAATGACCATGGTCTTCCCAAGGATAGTCTCACTA-TTGGATTAAAGGGC 3683 | ||| | | || ||| ||||| | |||| || | || || ||||| | ||||| Sbjct 1795 TTCAACACATCAACGACTCAGGTCT-CTCAAG-AT-GACTTGGTAATTGGACTGAAGGGT 1739 Query 3684 AAGGAGCGAGAGTTAAAAGACGTGGGAAGATTTTTCT-CTCTGATGACCTGGGATCTGAG 3742 || ||| |||| | ||| | | || |||||||| | | || ||| | ||| |||| | Sbjct 1738 AAAGAGAGAGAAGTGAAAAAGGAAGGCAGATTTTTTTTCACTCATGTCATGGAATCTCCG 1679 Query 3743 AGAGTATTTTGTATCCACTGAGTACCTCATTAAGATGTATTATGTTCCCTTGTTTGAAGG 3802 ||| ||| || | |||||| |||| || ||| ||||||||||| | ||| || Sbjct 1678 TCAGTGTTTCGTGACAACTGAGCACCTTATAAAGGAATATTATGTTCCTCTTTTTTCTGG 1619 Query 3803 ACTCACCATGGCAGATGATCT 3823 | | || |||||||| ||||| Sbjct 1618 ATTGACTATGGCAGACGATCT 1598 >seq90283 Length=1560 Score = 100 bits (110), Expect = 2e-17 Identities = 392/601 (65%), Gaps = 14/601 (2%) Strand=Plus/Plus Query 3678 AAGGGCAAGGAGCGAGAGTTAAAAGACGTGGGAAGATTTTTCTCTCTGATGACCTGGGAT 3737 ||||| ||||| || || | || | | ||| ||||||||||| || ||| ||| | Sbjct 248 AAGGGGAAGGAACGGGAAGTCAAGAAGGAGGGGAGATTTTTCTCCCTCATGTTATGGAAC 307 Query 3738 CTGAGAGA--GTATTTTGTATCCACTGAGTACCTCATTAAGATGTATTATGTTCCCTTGT 3795 | ||||| ||| || || || || ||||||||||| ||| | |||||||| | | Sbjct 308 TTAAGAGACAGTACTTCGTGTCGACCGAGTACCTCATCAAGGAGCTGTATGTTCCGCTCT 367 Query 3796 TTGAAGGACTCACCATGGCAGATGATCTAAAATCTGTAACACGAAAGATACTGGAGTGTA 3855 | ||| | || ||||| || ||| | | || || |||| ||||||| | Sbjct 368 TCTCTGGATTAACAATGGCGGACGATTTGACCAAAGTGACCAAAAAGTTACTGGATAATT 427 Query 3856 CCACTGGTCACGG-TCAGATCGGTTACAAGGTAGTCAGCTTTGCTAATCACTTAGACTAT 3914 ||| ||| || |||||| | ||||| | |||| || || |||||||| Sbjct 428 CCATCAATCAAGGATCAGAT-GACTACAACTCCATTTCTCTTGCAAACCATATAGACTAT 486 Query 3915 GAGAAATGGAACAATCATCAGA-GGAAAAAGTCAACCTTCCCCGTCTTCAAG-GTTATGG 3972 || ||||||||||| || |||| || | || ||| | || ||| ||| || |||| Sbjct 487 GAAAAATGGAACAACCACCAGAGGGGAGCAGCTAACGAT--CCAGCTTTAAGAGTCATGG 544 Query 3973 GTCAGTTCCTTGGGATGCCAAACCTATTCGCTCAAACTCATGATTTCTTCGAACAGAGTT 4032 | || ||| | || | | | | | || | |||||| || || ||||| | | || Sbjct 545 GACAATTCATCGGTTTACTAGAGTTGTTTGTTCAAACACACGAGTTCTTTGGAGGCAGCC 604 Query 4033 TTGTTTATTATGGTGAACGTCCTGATCTTATGACTGTTCAAGGAG-GAAAGATCGTGAAC 4091 |||| || || || |||||||| | ||| || | |||| | | || |||| Sbjct 605 TTGTCTACTACGGACCCCGTCCTGACTTAATGGAAGTAGATGGAGAGTCACTACG-GAAC 663 Query 4092 AATACAGAACAT-ATTGTATGTTGGAACGGTCAACTGGGCGGACTTGAAGGACTACGACA 4150 || | |||| | ||| || ||||| | || || || || | ||||| || ||||| Sbjct 664 AA-AGGGAACTTCCCTGTCTGCTGGAAGAGACAGCTCGGAGGCTTGGAAGGTCTCCGACA 722 Query 4151 AAAGGGATGGAGCGTCCTCAATCTTCTCGTCATCCTACGAGAGTCGAAGATCCGCAACAC 4210 ||| || |||||| | | ||||| | ||| ||| | || | |||| | ||||| Sbjct 723 AAAAGGTTGGAGCATTGTAAATCTATTGGTCCTCCCGCACGAAGCCAAGAGTAGAAACAC 782 Query 4211 CCAAGTCAGAGTGCTTGCTCAAGGTGACAACCAAGTGATTTGC-ACACGATACAAGATCC 4269 | || | | || | | || ||||||||||| || ||| || || |||||||||| Sbjct 783 CATGGTTAAAACCCTCGTGAAGGGAGACAACCAAGTAATATGCAACTCG-TACAAGATCC 841 Query 4270 C 4270 | Sbjct 842 C 842 >seq268548 Length=41840 Score = 78.8 bits (86), Expect = 5e-11 Identities = 87/115 (76%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 3711 AGATTTTTCTCTCTGATGACCTGGGATCTGAGAGAGTATTTTGTATCCACTGAGTACCTC 3770 ||||||||||| |||||| ||||| | || ||| ||| ||||||||||| || | ||| Sbjct 555 AGATTTTTCTCGCTGATGTCCTGGAAACTACGAGTGTACTTTGTATCCACGGAACATCTC 614 Query 3771 ATTAAGATGTATTATGTTCCCTTGTTTGAAGGACTCACCATGGCAGATGATCTAA 3825 || |||| || || ||| |||| || || ||||||||||| ||||||| Sbjct 615 ATCAAGAAGTTATACGTT--TTTGTCCTCGGGCCTAACCATGGCAGACGATCTAA 667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27555380096336