Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_031273.1 Length=11280 Score E Sequences producing significant alignments: (Bits) Value seq283927 86.0 4e-13 seq133769 86.0 4e-13 >seq283927 Length=152763 Score = 86.0 bits (94), Expect = 4e-13 Identities = 245/372 (66%), Gaps = 10/372 (3%) Strand=Plus/Minus Query 5749 ATGACTTGATAATCGGATTAAAGCCCAAAGAGAGAGAAGTGAAAAGCGAGGGAAGATTCT 5808 |||| | || || |||||||| || || | ||| | || | || |||||||||| Sbjct 1667 ATGATCTCATCATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAAGGAAGATTCT 1608 Query 5809 TCGCCTTGATGTCTTGGAAGTTAAGAGAGTATTTTGTGATAACGGAATACCTAATCAAGA 5868 || || | ||||| ||||| | | | ||||| || || || ||| ||||| | ||| Sbjct 1607 TCTCCCTAATGTCCTGGAATCTTCAACAATATTTCGTCATTACAGAA-ACCTACTAAAGG 1549 Query 5869 AGTTTTACTTGCCTCTATTTGGAGCCCTAACTATGGCCGACGACTATGTGACTGTCGTGA 5928 | || ||| | || ||||||| || || || ||||| ||||||| || |||| | Sbjct 1548 AATTCTACATACCCCTATTTGCAGGACTCACCATGGCAGACGACTTGATGGAAGTCGCAA 1489 Query 5929 AAAAGTTGCTTTCTTCCTCCTCTGGTCAAGGACTGTCCGATTATTCTCAAGTCA--ACTA 5986 |||||||| | || | || ||||| | | |||||| ||| | | || | Sbjct 1488 AAAAGTTGTTAGACAATTCACCGGGACAAGGGCAGGACGATTA---CCAATTGATTACCA 1432 Query 5987 CT-CGAATCACCTCGACTATTCTGCGTGGAACAACCACCAGAGGAAGGAAGCCACAGACC 6045 | | || || |||| || ||||| || ||||| || || || | ||| Sbjct 1431 TTGCCAACCATATCGATTACGAAAAATGGAATAATCACCAAAG---AGATGCTAACAACC 1375 Query 6046 CGGTCTTTCGAGTGATGGGCGAATTCTTCGGACTACCGAACCTTTTCACGAGAACTCATG 6105 |||| || | |||||||| ||||||| ||||| || ||| | || || | || || Sbjct 1374 CGGTGTTCAGCGTGATGGGGCAATTCTTGGGACTGCCAAACTTGTTAACTCGCACCCACA 1315 Query 6106 AATTCTTTCAAA 6117 |||||||| ||| Sbjct 1314 AATTCTTTGAAA 1303 >seq133769 Length=136818 Score = 86.0 bits (94), Expect = 4e-13 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 5751 GACTTGATAATCGGATTAAAGCCCAAAGAGAGAGAAGTGAAAAGCGAGGGAAGATTCTTC 5810 ||||| || |||||| | ||| ||||||||||| ||||| | ||||| |||| ||| Sbjct 122648 GACTTAATCATCGGACTGAAGGGAAAAGAGAGAGAGGTGAAGAAAGAGGGTCGATTTTTC 122589 Query 5811 GCCTTGATGTCTTGGAAGTTAAGAGAGTATTTTGTGATAACGGAATACCTAATCAAGAAG 5870 | | ||||| ||||||||| || | || ||||| ||| ||| | || || || || Sbjct 122588 TCTCTCATGTCGTGGAAGTTACGACAATACTTTGTCTCAACAGAACATCTCATAAAAGAG 122529 Query 5871 TTTTACTTGCCTCTATTTGGAGCCCTAACTATGGCCGACGAC 5912 || || | || || ||| | | || || ||||| |||||| Sbjct 122528 TTGTATGTACCACTGTTTAGTGGACTTACAATGGCGGACGAC 122487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35831235550272