Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_031282.1 Length=12651 Score E Sequences producing significant alignments: (Bits) Value seq219500 145 6e-31 seq133769 143 2e-30 seq49187 114 1e-21 seq176488 111 1e-20 seq283927 102 7e-18 >seq219500 Length=51628 Score = 145 bits (160), Expect = 6e-31 Identities = 254/363 (70%), Gaps = 14/363 (4%) Strand=Plus/Minus Query 8276 CATCCAGAAACACATCTA-TCAAAACTTTAGCTCAAGGGGATAATCAAGTCATCTGCACC 8334 || || | ||||| |||| ||||||| || ||||| || || |||||||||||||||| | Sbjct 6476 CAACCCGGAACAC-TCTAGTCAAAACGTTGGCTCAGGGTGACAATCAAGTCATCTGCAAC 6418 Query 8335 CAGTATCGTCTACA-GAAATACAGAACA--CAAGAAGAAATGGTCGAAAGAATCCAAAAA 8391 ||| ||||||| || || ||||| ||||||||| | | |||||||||| | || Sbjct 6417 ATGTACCGTCTACCTGAGAT---GAACAGTCAAGAAGAAGTAGAGGAAAGAATCCGAGAA 6361 Query 8392 ATTGTTCAAAATAATCAAGCAATCATATCAAATAT---TGAAAACGGTACCAGGAGATTG 8448 | | |||| ||| | || ||||| | | | || | || || | || || Sbjct 6360 GTCATCAAAAACAATGAGGCGATCATGACCGCTGTATCTGCA---GGGACAAAGAAGTTA 6304 Query 8449 GGCTTAATAATCAACAAAGACGAAACAATGCAGTCAGCAGACTTTTTGAGTTATGGTAAA 8508 || ||| | ||||||| ||| || ||||||||| ||||||||||| |||||||||| Sbjct 6303 GGATTACTGATCAACAGAGATGAGACAATGCAGAGCACAGACTTTTTGTCTTATGGTAAA 6244 Query 8509 GTTCCCGTATTCAGAGGAACCATTCGGAATCTTGAAACTAAACGTTGGTCCAGAGTCATG 8568 || || || || ||||| | || || ||| | ||||| ||||||||||||| Sbjct 6243 GTACCTGTCTTTAGAGGTAATATCTTACCACTGGAAGCAAAACGATGGTCCAGAGTCACA 6184 Query 8569 TGCACTACAAACGATCAGATTCCAACTCAAGCCAATGTTTTAGCTACAGTTACAACAAAT 8628 ||| || || |||||| |||| || | ||||| | |||| | |||||||| Sbjct 6183 TGCGTCACCAATGATCAGCTTCCTTCTTTGTCTAATGTGCTCTCTACCATCTCAACAAAT 6124 Query 8629 GCT 8631 ||| Sbjct 6123 GCT 6121 >seq133769 Length=136818 Score = 143 bits (158), Expect = 2e-30 Identities = 593/924 (64%), Gaps = 26/924 (3%) Strand=Plus/Minus Query 7735 GAATATTTAATCATTGGATTAAAGGAGAAAGAGCGAGAAATCAAGAAAGACGGGAGATTC 7794 ||| | |||||||| ||| | |||| |||||| |||| | |||||||| || |||| Sbjct 122651 GAAGACTTAATCATCGGACTGAAGGGAAAAGAGAGAGAGGTGAAGAAAGAGGGTCGATTT 122592 Query 7795 TTCTCTCTTATGTCGTGGCAACTCAGGGATTACTTTGTAATAACCGAATATTTGATCAAG 7854 |||||||| ||||||||| | | | | |||||||| ||| ||| || | || || Sbjct 122591 TTCTCTCTCATGTCGTGGAAGTTACGACAATACTTTGTCTCAACAGAACATCTCATAAAA 122532 Query 7855 CAACACTTTGTCCCATTATTCGACGGTTTGACTATGGCAGATGATCTCACGACTGTTATC 7914 | | ||| ||| | || || | || ||||| || || ||||| | |||| Sbjct 122531 GAGTTGTATGTACCACTGTTTAGTGGACTTACAATGGCGGACGACCTCACAAAAGTTACA 122472 Query 7915 AAGAAAATGATGGACAACGCAAATGGTCAAGGATTAGATACCTATGATTATATATCCATA 7974 |||||| | | |||| | ||||||| | ||| | || | || Sbjct 122471 AAGAAACTTCTCGACAGTTCTTTACATCAAGGACGAACAGACTACTCATCCATTTGTGTA 122412 Query 7975 GCCAATCATATAGATTATGAAAAGTGGAATAATCATCAGAGGAAAGAATCCACTACCC-- 8032 ||||| ||| | ||||| |||||||||| |||||||| | | || ||| | Sbjct 122411 GCCAACCATGTTGATTACCAAAAGTGGAACAATCATCAACGT---GGTTCGGCTAACAAT 122355 Query 8033 -CAGTATTTAAGGTAATGGGTCAATTCCTAGGT-TACCCTAACCTTATTAGCCGAACTCA 8090 | || || | || |||||||| || | || |||| ||| || | |||| || Sbjct 122354 ACTGTCTTCAGAGTCATGGGTCAGTTTGTGGGACTACCAGAACTTTTCGTGA-GAACGCA 122296 Query 8091 CGAATTCTTCGAAAGGAGTTTAATTTACCATGGCGGGAGAACAGACCTAATGAGGATCGT 8150 || |||||||| | ||| | | ||| |||| ||| | || ||||| || Sbjct 122295 TGAGTTCTTCGAGAACAGTCTTGTCTACTATGGACCCAGACCGGATTTAATGGACATG-- 122238 Query 8151 CAATGG------TGAAGTAGAAAATAATTCGGATATCCGAGTATGTTGGAATGGACAGAA 8204 ||| || | | ||| ||| | | ||||| ||||| ||| | ||||| || Sbjct 122237 CAAGGGGATACTTTGATTAGCAAAGCAGAC---TATCCC-GTATGCTGGGAAGGACAAAA 122182 Query 8205 AGGAGGTCTGGAAGGATTGAGACAGAAAGGTTGGAGCATTCTAAACCTTCTACTGATTAA 8264 ||||||||| ||||| | ||||| || || ||||||||| |||| ||||| | | Sbjct 122181 AGGAGGTCTCGAAGGCCTAAGACAAAAGGGGTGGAGCATTGTAAATCTTCTCGTACTCCT 122122 Query 8265 AAGAGAAGGGTCATCCAGAAACACATCTATCAAAACTTTAGCTCAAGGGGATAATCAAGT 8324 |||| | | || | ||||| | | ||||| ||||| |||||||| || ||||| Sbjct 122121 GCGAGAGGCAAAAACCCGTAACACTTTAGTTAAAACATTAGCGCAAGGGGACAACCAAGT 122062 Query 8325 CATCTGCACCCAGTATCGTCT-ACAGAAATACAGAACACAAGAAGAAATGGTCGAAAGAA 8383 ||||||| | ||||||||| | |||| | | | ||||||||| | ||||||| Sbjct 122061 GATCTGCAACATGTATCGTCTCCCTGAAACA-ACCATCGGAGAAGAAATCGAGGAAAGAA 122003 Query 8384 TCCAAAAAATTGTTCAAAATAATCAAGCAATCATATCAAATATTGAAAACGGTACCAGGA 8443 | | | || | | | ||||| |||| || || | | | || || | | Sbjct 122002 TTCGAGAAGTCATCAAGAATAACGAAGCCATAATGACTGCCGTGTCAGCAGGAACACGTA 121943 Query 8444 GATTGGGCTTAATAATCAACAAAGACGAAACAATGCAGTCAGCA--GACTTTTTGAGTTA 8501 | |||| || ||||||||| ||| || || ||||| |||| || ||| || || Sbjct 121942 AACTGGGATTGCTAATCAACAGAGATGAGACCATGCA--AAGCACTGATTTTCTGTCCTA 121885 Query 8502 TGGTAAAGTTCCCGTATTCAGAGGAACCATTCGGAATCTTGAAACTAAACGTTGGTCCAG 8561 ||| || || || || |||||||||| ||| | | | || | || | ||||| | Sbjct 121884 TGGCAAGGTACCAGTGTTCAGAGGAAACATCCTACCTTTAGAGGCAAAGAGATGGTCACG 121825 Query 8562 AGTCATGTGCACTACAAACGATCAGATTCCAACTCAAGCCAATGTTTTAGCTACAGTTAC 8621 ||| | ||| || || ||||| | || || ||||||| | | || || | Sbjct 121824 AGTTACATGCGTAACCAATGATCAATTACCTTCTTTGTCCAATGTACTTTCAACCATTTC 121765 Query 8622 AACAAATGCTTTAACAGTTGCCCA 8645 |||||||||| | ||||| || || Sbjct 121764 AACAAATGCTATCACAGTAGCTCA 121741 >seq49187 Length=20191 Score = 114 bits (126), Expect = 1e-21 Identities = 224/331 (68%), Gaps = 0/331 (0%) Strand=Plus/Plus Query 7769 GAGAAATCAAGAAAGACGGGAGATTCTTCTCTCTTATGTCGTGGCAACTCAGGGATTACT 7828 ||||| | |||||||| | ||||||||||| || ||||||||| | || ||| | |||| Sbjct 6380 GAGAAGTAAAGAAAGAGGAAAGATTCTTCTCGCTCATGTCGTGGAATCTGAGGCAATACT 6439 Query 7829 TTGTAATAACCGAATATTTGATCAAGCAACACTTTGTCCCATTATTCGACGGTTTGACTA 7888 || | ||| || | || || ||| | || ||| || | ||| || ||||||| Sbjct 6440 CCGTCACAACAGAGCACTTAATAAAGGAGTTCTATGTGCCCCTTTTCTCGGGATTGACTA 6499 Query 7889 TGGCAGATGATCTCACGACTGTTATCAAGAAAATGATGGACAACGCAAATGGTCAAGGAT 7948 |||| |||||||| || | || | |||||| | | || | | | ||||| Sbjct 6500 TGGCTGATGATCTGACTAAGGTGACAAAGAAACTCCTAGATAGTTCGATCAACCAAGGGC 6559 Query 7949 TAGATACCTATGATTATATATCCATAGCCAATCATATAGATTATGAAAAGTGGAATAATC 8008 || |||| | | || || | || ||||| ||||||||||||| |||||||| | Sbjct 6560 AGAATTACTATAACTCCATTTCTCTGGCAAATCACGTAGATTATGAAAAATGGAATAACC 6619 Query 8009 ATCAGAGGAAAGAATCCACTACCCCAGTATTTAAGGTAATGGGTCAATTCCTAGGTTACC 8068 ||||| || || | | || || || || ||||||||||| |||||||||| | Sbjct 6620 ATCAGCGGGGGGAGGCGAATAGTCCTGTGTTCCGAGTAATGGGTCAGTTCCTAGGTTTGC 6679 Query 8069 CTAACCTTATTAGCCGAACTCACGAATTCTT 8099 || | || | || ||||| || ||||| Sbjct 6680 CTGAGCTGTTCGTTCGCACTCATGAGTTCTT 6710 >seq176488 Length=2532 Score = 111 bits (122), Expect = 1e-20 Identities = 404/623 (65%), Gaps = 22/623 (4%) Strand=Plus/Minus Query 7734 GGAATATTTAATCATTGGATTAAAGGAGAAAGAGCGAGAAATCAAGAAAGACGGGAGATT 7793 |||| | || |||||||| || || | ||| ||| ||||| | |||||||| || ||| Sbjct 640 GGAAGACTTGATCATTGGCTTGAAAGGGAAGGAGAGAGAAGTAAAGAAAGAGAGGCAATT 581 Query 7794 CTTCTCTCTTATGTCGTGGCAACTCAGGGATTACTTTGTAATAACCGAATATTTGATCAA 7853 |||||| || ||||| ||| | | ||| | |||||||| ||| ||| || | || || Sbjct 580 CTTCTCCCTCATGTCTTGGAAGTTAAGGCAATACTTTGTCTCAACAGAACATCTTATAAA 521 Query 7854 GCAACACTTTGTCCCATTATTCGACGGTTTGACTATGGCAGATGATCTCACGACTGTTAT 7913 || | || ||| | ||| |||| | || ||||||||||| ||||| | |||| Sbjct 520 AGAATTGTACGTGCCACTGTTCAACGGACTCACGATGGCAGATGACCTCACAAAGGTTAC 461 Query 7914 CAAGAAAATGATGGACAACGCAAATGGTCAAGGATTAGATACCTATGATTATATATCCA- 7972 |||||| | | |||| | |||||| | | || |||||| |||| Sbjct 460 AAAGAAACTTCTCGACAGTTCTTTACATCAAGG---ACAAAC---TGATTACTCCTCCAT 407 Query 7973 -----TAGCCAATCATATAGATTATGAAAAGTGGAATAATCATCA--GAGGAAAGAATCC 8025 | ||||| ||| | ||||| | || |||||||| ||||| | || | || Sbjct 406 TTGTGTGGCCAACCATGTTGATTACCAGAAATGGAATAACCATCAACGTGGTTTG--GCC 349 Query 8026 ACTACCCCAGTATTTAAGGTAATGGGTCAATTCCTAGGTTACCCTAACCTTATTAGCCGA 8085 | | ||| || || || |||||||| || | ||| || | ||| | | || Sbjct 348 AACAACCCTGTCTTCCGAGTGATGGGTCAGTTTGTGGGTCTGCCAGAACTTTTCGTCAGA 289 Query 8086 ACTCACGAATTCTTCGAAAGGAGTTTAATTTACCATGGCGGGAGAACAGACCTAATGAGG 8145 || ||||| |||||||| | ||| | || || |||| ||| | || |||| || Sbjct 288 ACGCACGAGTTCTTCGAGAACAGTCTCATCTATTATGGACCTAGACCTGATTTAAT--GG 231 Query 8146 ATCGTCAA-TGGTGAAGTAGA-AAATAATTC-GGATATCCGAGTATGTTGGAATGGACAG 8202 | ||| || | | || | ||| | | ||||| || |||||| | || ||| Sbjct 230 AAGTACAAGGGGACACCTTGATCAGTAAAGCAAGTTATCC-TGTCTGTTGGGAAGGCCAG 172 Query 8203 AAAGGAGGTCTGGAAGGATTGAGACAGAAAGGTTGGAGCATTCTAAACCTTCTACTGATT 8262 ||||| ||||| || || |||||||| ||||| ||||| ||| | || | || || | Sbjct 171 AAAGGGGGTCTCGAGGGTTTGAGACAAAAAGGGTGGAGTATTGTGAATTTGCTCGTGCTC 112 Query 8263 AAAAGAGAAGGGTCATCCAGAAACACATCTATCAAAACTTTAGCTCAAGGGGATAATCAA 8322 |||||| || |||| || | |||| || |||| || ||||| || || Sbjct 111 TTGCGAGAAGCTAAGACCCGAAATACCCTTGTCAAGACCCTAGCACAGGGGGACAACCAG 52 Query 8323 GTCATCTGCACCCAGTATCGTCT 8345 || || || | | |||||| || Sbjct 51 GTGATATGTAACATGTATCGCCT 29 >seq283927 Length=152763 Score = 102 bits (112), Expect = 7e-18 Identities = 268/403 (67%), Gaps = 16/403 (4%) Strand=Plus/Minus Query 7721 ACGGATTAGATCTGGAATATTTAATCATTGGATTAAAGGAGAAAGAGCGAGAAATCAAGA 7780 ||||||| || || || | |||||||||||||| | || || | |||||||||| Sbjct 1682 ACGGATTGGACAGAGATGATCTCATCATTGGATTAAAAGGAAAGGAATGTGAAATCAAGA 1623 Query 7781 AAGACGGGAGATTCTTCTCTCTTATGTCGTGGCAACTCAGGGATTACTTTGTAATAACCG 7840 | || || ||||||||||| || ||||| ||| | || | || || || || || | Sbjct 1622 AGGAAGGAAGATTCTTCTCCCTAATGTCCTGGAATCTTCAACAATATTTCGTCATTACAG 1563 Query 7841 AATATTTGATCAAGCAACACTTTGTCCCATTATTCGACGGTTTGACTATGGCAGATGATC 7900 || | | | ||| || || | || |||| | || | || |||||||| || Sbjct 1562 AA-ACCTACTAAAGGAATTCTACATACCCCTATTTGCAGGACTCACCATGGCAGACGACT 1504 Query 7901 TCACGACTGTTATCAAGAAAATGATGGACAACGCAAATGGTCAAGGATTAGA----TACC 7956 | | | || || || || | ||||| || || ||||| || |||| Sbjct 1503 TGATGGAAGTCGCAAAAAAGTTGTTAGACAATTCACCGGGACAAGGGCAGGACGATTACC 1444 Query 7957 TAT-GATTATATATCCATAGCCAATCATATAGATTATGAAAAGTGGAATAATCATCAGAG 8015 || ||||| |||| ||||| ||||| ||||| ||||| ||||||||||| || || Sbjct 1443 AATTGATTA-----CCATTGCCAACCATATCGATTACGAAAAATGGAATAATCACCAAAG 1389 Query 8016 GAAAGAATCCACTACCCCAGTATTTAAGGTAATGGGTCAATTCCTAGGTTACCCTAACCT 8075 ||| | | | ||| || || | || ||||| |||||| | || || || || Sbjct 1388 ---AGATGCTAACAACCCGGTGTTCAGCGTGATGGGGCAATTCTTGGGACTGCC-AAACT 1333 Query 8076 TATTAGC-CGAACTCACGAATTCTTCGAAAGGAGTTTAATTTA 8117 | ||| | || || ||| ||||||| |||| ||||||||||| Sbjct 1332 TGTTAACTCGCACCCACAAATTCTTTGAAAACAGTTTAATTTA 1290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40200198903120