Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_031301.1 Length=11103 Score E Sequences producing significant alignments: (Bits) Value seq133769 141 7e-30 seq176488 114 9e-22 >seq133769 Length=136818 Score = 141 bits (156), Expect = 7e-30 Identities = 397/599 (66%), Gaps = 18/599 (3%) Strand=Plus/Minus Query 6274 AATTATTGGCTTGAAGGGAAAGGAACGTGAAGTTAAGAAAAAAGGTCGTTTCTTTTCTCT 6333 ||| || || |||||||||| || | || || |||||| | ||||| || || ||||| Sbjct 122643 AATCATCGGACTGAAGGGAAAAGAGAGAGAGGTGAAGAAAGAGGGTCGATTTTTCTCTCT 122584 Query 6334 AATGTCATGGATGTTGCGAGAATATTTTGTGATAACAGAATATTTAATCAAGGAGAATTA 6393 ||||| |||| ||| ||| |||| ||||| ||||||| || | || || ||| || Sbjct 122583 CATGTCGTGGAAGTTACGACAATACTTTGTCTCAACAGAACATCTCATAAAAGAGTTGTA 122524 Query 6394 CGTTCCTCTGTTTAGTGGATTGACAATGGCTGATGATTTGACAACTGTCATATCAAAATT 6453 || || |||||||||||| | |||||||| || || | |||| || | | ||| | Sbjct 122523 TGTACCACTGTTTAGTGGACTTACAATGGCGGACGACCTCACAAAAGTTACAAAGAAACT 122464 Query 6454 GTTAGATAGGAGTCAGGGACAAGGTGGTAAAGATTACACTAATATTTGTATCGCAAATCA 6513 | || || | ||||| | | ||| ||| | |||||| | || || || Sbjct 122463 TCTCGACAGTTCTTTACATCAAGGACGAACAGACTACTCATCCATTTGTGTAGCCAACCA 122404 Query 6514 TATTGACTATGAGAAATGGAACAACCATCAAAGAAAAGCTGCAACTGATCCAGTTTTCAA 6573 | |||| || | || |||||||| |||||| | | || | || | || |||| Sbjct 122403 TGTTGATTACCAAAAGTGGAACAATCATCAACGTGGTTCGGCTAACAATACTGTCTTCAG 122344 Query 6574 GGTCATGGGAGAGTTCTTAGGA-TATCCCAACTTATTCACAAGAACTCACGAATTCTTTC 6632 |||||||| |||| | ||| || | ||||| ||| ||||| || || ||| ||| Sbjct 122343 AGTCATGGGTCAGTTTGTGGGACTACCAGAACTT-TTCGTGAGAACGCATGAGTTC-TTC 122286 Query 6633 AAGAA-AGTCTAATTTACTACAATGGAC---GACCAGATTTGATG--CGTGTCAACAAAG 6686 |||| |||| || |||| |||||| |||| ||||| ||| | || | | Sbjct 122285 GAGAACAGTC---TTGTCTACTATGGACCCAGACCGGATTTAATGGACATGCAAGGGGAT 122229 Query 6687 AC--AGCTTAACAAATGCAACAAATCAAATAGTATGTTGGGAAGGTCAAGAAGGTGGATT 6744 || | ||| |||| ||| ||| ||||| |||||||| ||| |||| || | Sbjct 122228 ACTTTGATTAGCAAA-GCAGACTATC---CCGTATGCTGGGAAGGACAAAAAGGAGGTCT 122173 Query 6745 AGAAGGATTGAGACAAAAGGGATGGACAACAGTAGGATTATTGATGATAAGACGAGAGGC 6804 ||||| | ||||||||||| |||| | ||| | | | | |||||||| Sbjct 122172 CGAAGGCCTAAGACAAAAGGGGTGGAGCATTGTAAATCTTCTCGTACTCCTGCGAGAGGC 122113 Query 6805 TAGAGTTCGAAACACAACGGTCAAAATTTTAGCACAAGGAGATAATCAAGTGATTTGCA 6863 | | || ||||| || |||| ||||| ||||| || || |||||||| |||| Sbjct 122112 AAAAACCCGTAACACTTTAGTTAAAACATTAGCGCAAGGGGACAACCAAGTGATCTGCA 122054 >seq176488 Length=2532 Score = 114 bits (126), Expect = 9e-22 Identities = 336/506 (66%), Gaps = 20/506 (4%) Strand=Plus/Minus Query 6275 ATTATTGGCTTGAAGGGAAAGGAACGTGAAGTTAAGAAAAAAGGTCGTTTCTTTTCTCTA 6334 || ||||||||||| || ||||| | ||||| |||||| | | | ||||| || || Sbjct 630 ATCATTGGCTTGAAAGGGAAGGAGAGAGAAGTAAAGAAAGAGAGGCAATTCTTCTCCCTC 571 Query 6335 ATGTCATGGATGTTGCGAGAATATTTTGTGATAACAGAATATTTAATCAAGGAGAAT--T 6392 ||||| |||| ||| | |||| ||||| ||||||| || | || || ||||| | Sbjct 570 ATGTCTTGGAAGTTAAGGCAATACTTTGTCTCAACAGAACATCTTATAAA--AGAATTGT 513 Query 6393 ACGTTCCTCTGTTTAGTGGATTGACAATGGCTGATGATTTGACAACTGTCATATCAAAAT 6452 |||| || ||||| | ||| | || ||||| ||||| | |||| || | | ||| Sbjct 512 ACGTGCCACTGTTCAACGGACTCACGATGGCAGATGACCTCACAAAGGTTACAAAGAAAC 453 Query 6453 TGTTAGATAGGAGTCAGGGACAAGGTGGTAAAGATTACACTAATATTTGTATCGCAAATC 6512 | | || || | ||||| | |||||| | |||||| | || || | Sbjct 452 TTCTCGACAGTTCTTTACATCAAGGACAAACTGATTACTCCTCCATTTGTGTGGCCAACC 393 Query 6513 ATATTGACTATGAGAAATGGAACAACCATCAAAGAAAAGCTGCAACTGATCCAGTTTTCA 6572 || |||| || |||||||||| ||||||||| | || | | || || ||| Sbjct 392 ATGTTGATTACCAGAAATGGAATAACCATCAACGTGGTTTGGCCAACAACCCTGTCTTCC 333 Query 6573 AGGTCATGGGAGAGTTCTTAGGATATCCC--AACTTATTCACAAGAACTCACGAATTCTT 6630 || ||||| |||| | || | | || ||||| ||| ||||| ||||| ||| | Sbjct 332 GAGTGATGGGTCAGTT-TGTGGGTCTGCCAGAACTT-TTCGTCAGAACGCACGAGTTC-T 276 Query 6631 TCAAGAA-AGTCTAATTTACTACAATGGAC---GACCAGATTTGATGCGTGTCAACAA-- 6684 || |||| ||||| || ||| |||||| |||| ||||| ||| || |||| Sbjct 275 TCGAGAACAGTCTCAT---CTATTATGGACCTAGACCTGATTTAATGGAAGT--ACAAGG 221 Query 6685 AGACAGCTTAACAAATGCAACAAATCAAATAGTATGTTGGGAAGGTCAAGAAGGTGGATT 6744 |||| ||| | | | | ||| | | || ||||||||||| || |||| || | Sbjct 220 GGACACCTTGATCAGTAAAGCAAGTTATCCTGTCTGTTGGGAAGGCCAGAAAGGGGGTCT 161 Query 6745 AGAAGGATTGAGACAAAAGGGATGGA 6770 || || ||||||||||| || |||| Sbjct 160 CGAGGGTTTGAGACAAAAAGGGTGGA 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35267189953296