Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_031304.1 Length=10306 Score E Sequences producing significant alignments: (Bits) Value seq225232 104 2e-18 seq292816 98.7 6e-17 seq283927 98.7 6e-17 seq49187 80.6 2e-11 >seq225232 Length=278362 Score = 104 bits (114), Expect = 2e-18 Identities = 249/372 (67%), Gaps = 25/372 (7%) Strand=Plus/Plus Query 5534 GCCAATCATCTAGACTACGAGAAATGGAACAACCATCAACGGAAGGAATCAACTTCTCCT 5593 ||||| ||| | |||||||||||||| ||||| || || | ||| ||| |||| Sbjct 38954 GCCAACCATGTGGACTACGAGAAATGAAACAATCACCAGAGAGCCGAAGCAAACGATCCT 39013 Query 5594 GTTTTTACCGTCATGGGGCAATTCCTAGGGCTTCCCAAATTAATA-GCTAGGACACACGA 5652 || |||||| |||||| ||||| |||| || ||||||| | || || | || || Sbjct 39014 GTCTTTACCATCATGGTAAAATTCTTAGGTCT-CCCAAATGCCTTTGCAAGAATTCATGA 39072 Query 5653 ATTTTTTGAACAAAGTTTTATTTACTACGGAGATCGTCCCGATTTGATGACCATCAAGGA 5712 ||||| |||| || || | ||||| ||| | || ||| ||||| | || Sbjct 39073 GTTTTTCCAACACAGCCTTGTGTACTATGGACCAAGGCCTGATCTGATGGAAGT---GGT 39129 Query 5713 TGGAGAAATTGTCAACGTCGATGAAAACCAGAAA---------GTCTGCTGGAATGGTCA 5763 |||||| || | | ||||| || | || || ||| | || || Sbjct 39130 TGGAGA--TTCCCTGC-------AAAACAAGGGATCTTTCCCCGTGTGTTGGGAGGGCCA 39180 Query 5764 ATTGGGGGGACTGGAAGGGCTTCGACAAAAAGGATGGAGCGTACTTAATCTTCTTGTGAT 5823 || ||||||||||||||| | | |||| |||||||||| | | || ||| | || | Sbjct 39181 GTTAGGGGGACTGGAAGGGTTAAGGCAAAGAGGATGGAGCATCGTCAACCTTTTGGTTTT 39240 Query 5824 CTTAAGAGAATCTAAAATTCGAAACACGAAGGTCAGAGTCCTT-GCTCAAGGGGACAATC 5882 ||||||| | |||| ||| ||||| ||| | || |||| || ||||| || |||| Sbjct 39241 ACTAAGAGAGGCCAAAACTCGCAACACCCTGGT-AAAGACCTTGGCCCAAGGAGATAATC 39299 Query 5883 AAGTGATCTGCA 5894 |||| ||||||| Sbjct 39300 AAGTTATCTGCA 39311 >seq292816 Length=4775 Score = 98.7 bits (108), Expect = 6e-17 Identities = 178/258 (69%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 4889 TATGCAAACGCCCTAGCAAGTGATCTTGCTTACATTGTCCTGAAGCACGAATTTGATCAG 4948 |||||| |||| |||||||| ||||||||||| || | || | | || ||| | Sbjct 2168 TATGCAGACGCTCTAGCAAGCGATCTTGCTTATATGATATTGGAAAAAGAGTTTTTTGCT 2109 Query 4949 CAAAAGAAGTGGTTCGTGGATCCTGACAAGATGGAGCCGGA-TGACCCGTTGAGAGACCA 5007 ||| ||||||||||||||||||||||| |||| ||| || ||||| | | | || Sbjct 2108 CAACGTAAGTGGTTCGTGGATCCTGACAAAATGG-GCCTGACAGACCCTCTTCGCAAACA 2050 Query 5008 TGTTCTAAATTGCACCTGGCCAACTCCGGTACAGATAGAGGATGTTGGGGACCGTTGGCA 5067 ||| | ||| ||| ||||| ||||| | |||| ||| || |||| || || Sbjct 2049 TGTCATGAATGTCACATGGCCCACTCCACTTGAGATTCGGGAGTATGAGGACAAGTGACA 1990 Query 5068 TCTTCTTCCTCTCCTTCCTTGCTATGAGGTTCCACAGACGATAGATCCTGCTGTGTTGTA 5127 ||||| ||| | |||||||| || ||||| || || ||||| ||||| | || Sbjct 1989 CAGACTTCCCCTCTTACCTTGCTACAGCGTACCACAAACAATTGATCCCGCTGTCCTTTA 1930 Query 5128 TGCTGACAAAAGCCATTC 5145 |||| |||||| || Sbjct 1929 CAACGACAGAAGCCACTC 1912 >seq283927 Length=152763 Score = 98.7 bits (108), Expect = 6e-17 Identities = 197/287 (69%), Gaps = 14/287 (5%) Strand=Plus/Minus Query 5534 GCCAATCATCTAGACTACGAGAAATGGAACAACCATCAACG-GAAGGAATCAACTTCTCC 5592 ||||| ||| | || ||||| |||||||| || || ||| | || | | |||| || Sbjct 1429 GCCAACCATATCGATTACGAAAAATGGAATAATCACCAAAGAGATGCTAACAAC----CC 1374 Query 5593 TGTTTTTACCGTCATGGGGCAATTCCTAGGGCTTCCCAAATTAATAGCTAGGACACACGA 5652 || || | ||| |||||||||||| | || || || || || || || | || ||| | Sbjct 1373 GGTGTTCAGCGTGATGGGGCAATTCTTGGGACTGCCAAACTTGTTAACTCGCACCCACAA 1314 Query 5653 ATTTTTTGAACAAAGTTTTATTTACTACGGAGATCGTCCCGATTTGATGACCATCAAGGA 5712 ||| |||||| | ||||| ||||| |||||| ||||| || ||||| |||| Sbjct 1313 ATTCTTTGAAAACAGTTTAATTTATTACGGACCACGTCCGGACCTGATGGAGGCCAAG-- 1256 Query 5713 TGGAGAAA---TTGTCAACGTCGATGAAAACCAGAAAGTCTGCTGGAATGGTCAATTGGG 5769 ||||| | | | ||| ||| | || || ||||||||||| || ||||| Sbjct 1255 -GGAGACACGCTAGAGAAC--CGA-GGCCACTTCCCTGTTTGCTGGAATGGCCAGTTGGG 1200 Query 5770 GGGACTGGAAGGGCTTCGACAAAAAGGATGGAGCGTACTTAATCTTC 5816 |||||||| || || || || || || ||| | || || |||||| Sbjct 1199 TGGACTGGAGGGTCTCCGTCAGAAGGGGTGGGGTGTGGTTTATCTTC 1153 >seq49187 Length=20191 Score = 80.6 bits (88), Expect = 2e-11 Identities = 114/158 (72%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 5306 ATCGGGCTGAAAGGGAAAGAAAGAGAACTAAAGGAAATAGGAAGG-TTCTTTTCTTTAAT 5364 |||||||| |||| || ||||||||| ||||| ||| ||||| | ||||| || | || Sbjct 6358 ATCGGGCTCAAAGTAAAGGAAAGAGAAGTAAAG-AAAGAGGAAAGATTCTTCTCGCTCAT 6416 Query 5365 GACATGGGCTCTAAGGGAATATTTCGTCTCTACTGAGTATTTGATCAAAACTTACTTCGT 5424 | | ||| ||| ||| |||| | |||| | || ||| | || || || | || || Sbjct 6417 GTCGTGGAATCTGAGGCAATACTCCGTCACAACAGAGCACTTAATAAAGGAGTTCTATGT 6476 Query 5425 TCCATTATTTGAGGGACTCACTATGGCTGATGATCTGA 5462 || | || |||| | ||||||||||||||||||| Sbjct 6477 GCCCCTTTTCTCGGGATTGACTATGGCTGATGATCTGA 6514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32727391417760