Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_031305.1 Length=10833 Score E Sequences producing significant alignments: (Bits) Value seq90283 105 5e-19 seq115841 102 6e-18 seq225232 100 2e-17 seq49187 98.7 7e-17 >seq90283 Length=1560 Score = 105 bits (116), Expect = 5e-19 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 5981 CCTAGAGATCAGCTGGTTATCGGACTGAAAGGGAAGGAACGGGAGTTGAAGAAAAACGGG 6040 |||| ||| | ||||| || || || || |||||||||||||| | ||||| | ||| Sbjct 221 CCTAAAGAAGACCTGGTCATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAGAAGGAGGGG 280 Query 6041 CGCTTCTTCTCATTGATGTCATGGATGTT--GCGAGAATATTTCGTGGTCACTGAGTACC 6098 | || ||||| | |||| ||||| || | || | || |||||| || ||||||| Sbjct 281 AGATTTTTCTCCCTCATGTTATGGAACTTAAGAGACAGTACTTCGTGTCGACCGAGTACC 340 Query 6099 TTATCAAGCTTCACTATGTTCCCCTTTTCTCAGGCCTGACTATGGCGGATGATCTAACCA 6158 | |||||| | |||||||| || ||||| || | || |||||||| ||| | |||| Sbjct 341 TCATCAAGGAGCTGTATGTTCCGCTCTTCTCTGGATTAACAATGGCGGACGATTTGACCA 400 Query 6159 CAGTCATCACCAAATTATTGGA 6180 ||| | || || ||| |||| Sbjct 401 AAGTGACCAAAAAGTTACTGGA 422 >seq115841 Length=1175 Score = 102 bits (112), Expect = 6e-18 Identities = 145/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 5981 CCTAGAGATCAGCTGGTTATCGGACTGAAAGGGAAGGAACGGGAGTTGAAGAAAAACGGG 6040 |||| ||| | ||||| || || || || |||||||||||||| | ||||| | ||| Sbjct 909 CCTAAAGAAGACCTGGTCATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAGAAGGAGGGG 968 Query 6041 CGCTTCTTCTCATTGATGTCATGGATGTT--GCGAGAATATTTCGTGGTCACTGAGTACC 6098 | || ||||| | |||| ||||| || | || | || |||||| || ||||||| Sbjct 969 AGATTTTTCTCCCTCATGTTATGGAACTTAAGAGACAGTACTTCGTGTCGACCGAGTACC 1028 Query 6099 TTATCAAGCTTCACTATGTTCCCCTTTTCTCAGGCCTGACTATGGCGGATGATCTAACCA 6158 | |||||| | |||||||| || ||||| || | || |||||||| ||| | |||| Sbjct 1029 TCATCAAGGAGCTGTATGTTCCGCTCTTCTCTGGATTAACAATGGCGGACGATTTGACCA 1088 Query 6159 CAGTCATCACCAAATTATTGGA 6180 ||| | || ||| || |||| Sbjct 1089 AAGTGACCA--AAAGTACTGGA 1108 >seq225232 Length=278362 Score = 100 bits (110), Expect = 2e-17 Identities = 397/610 (65%), Gaps = 35/610 (6%) Strand=Plus/Plus Query 6008 AAAGGG-AAGGAACGGGAGTTGAAGAAAAACGGGCGCTTCTTCTCATTG--ATGTCATGG 6064 |||||| || ||| | ||| | |||| | ||| | || |||| || ||||||||| Sbjct 38732 AAAGGGCAAAGAAAGAGAGATCAAGAGGGAGGGGAGATT--TCTCCTTCTCATGTCATGG 38789 Query 6065 ATGTTGCGAGAATATTTCGTGGTCACTGAGTAC--CTTATCAAGC---TTCACTATGTTC 6119 | | ||| | ||| ||||| | ||||| || ||||||||| |||| ||||| Sbjct 38790 AAGATGCAACAATTATTCGTCATGACTGAACACGTCTTATCAAGGAATTTCA---TGTTC 38846 Query 6120 CCCTTTTCTCAGGCCTGACTATGGCGGATGATCTAACCACAGTCATCACCAA-ATTATTG 6178 | | || || ||||| | ||||| || || || || | ||| | | || ||| ||| Sbjct 38847 CATTGTTTTCGGGCCTTAAAATGGCAGACGACCTCACTAGAGTGACTAAAAAGATTCTTG 38906 Query 6179 G--ACCGGACC---CAAGGACAGGGAGGTACATCGTATGAAAATATCTGCATCGCCAATC 6233 || | | ||||| || | | || ||||| || | | ||| ||||| | Sbjct 38907 ACAACTCAATCAACCAAGGTCAAGTTGATA-ATCGT-TGCATTTCTCTA----GCCAACC 38960 Query 6234 ACATTGATTATGAGAAATGGAACAATCATCAACGTCAGGAGGCCACTGCGCCAGTGTTCA 6293 | | || || |||||||| |||||||| || | || || | | || || || | Sbjct 38961 ATGTGGACTACGAGAAATGAAACAATCACCAGAGAGCCGAAGCAAACGATCCTGTCTTTA 39020 Query 6294 GGGTGATGGGACAATTCCTTGGATATCCAAACCTCATTGCGAGGACCCATGAGTTCTTTC 6353 | |||| | ||||| | || ||||| | |||| || | |||||||| || | Sbjct 39021 CCATCATGGTAAAATTCTTAGGTCTCCCAAATGCCTTTGCAAGAATTCATGAGTTTTTCC 39080 Query 6354 AACAAAGCTTAATATACTACAATGGT---AGGCCCGATCTCATGATTGTGTCCAAGGATT 6410 |||| ||| | | ||||| ||| ||||| ||||| ||| ||| |||| Sbjct 39081 AACACAGCCTTGTGTACTA---TGGACCAAGGCCTGATCTGATGGAAGTGGTTGGAGATT 39137 Query 6411 CTCTTAAGTCCCGTGGCCAACATTTG--GTTTGTTGGGAGGGCCAGGCAGGCGGACTGGA 6468 | || | | || | | || || ||||||||||||||| ||| |||||||| Sbjct 39138 CCCTGCAAAACAAGGG--ATCTTTCCCCGTGTGTTGGGAGGGCCAGTTAGGGGGACTGGA 39195 Query 6469 AGGTTTGCGACAAAAAGGATGGAGTGTCCTTAGCCTATTGGTTATTCAGAGGGAGTCCAA 6528 ||| || | |||| ||||||||| || | | ||| |||||| | | || ||| |||| Sbjct 39196 AGGGTTAAGGCAAAGAGGATGGAGCATCGTCAACCTTTTGGTTTTACTAAGAGAGGCCAA 39255 Query 6529 AATAAGAAATACCAAGGTCAAGACGCTGGCGCAAGGTGACAACCAAGTCATTTGTACTCA 6588 || | || ||| ||| ||||| |||| ||||| || || ||||| || || | | Sbjct 39256 AACTCGCAACACCCTGGTAAAGACCTTGGCCCAAGGAGATAATCAAGTTATCTGCAATTC 39315 Query 6589 GTACAAGCTG 6598 | ||||| || Sbjct 39316 GCACAAGTTG 39325 >seq49187 Length=20191 Score = 98.7 bits (108), Expect = 7e-17 Identities = 248/376 (66%), Gaps = 12/376 (3%) Strand=Plus/Plus Query 5984 AGAGATCAGCTGGTTATCGGACTGAAAGGGAAGGAACGGGAGTTGAAGAAAAACGGGCGC 6043 |||||| | ||| | ||||| || |||| |||||| | || | |||||| | | | Sbjct 6343 AGAGATGACCTGATAATCGGGCTCAAAGTAAAGGAAAGAGAAGTAAAGAAAGAGGAAAGA 6402 Query 6044 TTCTTCTCATTGATGTCATGGATGTTGCGAGAATATTTCGTGGTCACTGAGTACCTTATC 6103 |||||||| | ||||| |||| || | |||| | ||| || ||| || | || Sbjct 6403 TTCTTCTCGCTCATGTCGTGGAATCTGAGGCAATACTCCGTCACAACAGAGCACTTAATA 6462 Query 6104 AAGCTTCACTATGTTCCCCTTTTCTCAGGCCTGACTATGGCGGATGATCTAACCACAGTC 6163 ||| |||||| ||||||||||| || |||||||||| |||||||| || | || Sbjct 6463 AAGGAGTTCTATGTGCCCCTTTTCTCGGGATTGACTATGGCTGATGATCTGACTAAGGTG 6522 Query 6164 ATCACCAAATTATTGGACCG------GACCCAAGGACAGGGAGGTACATCGTATGAAAAT 6217 | | ||| | | || | | |||||| || || ||| ||| | Sbjct 6523 ACAAAGAAACTCCTAGATAGTTCGATCAACCAAGGGCA--GAATTAC----TATAACTCC 6576 Query 6218 ATCTGCATCGCCAATCACATTGATTATGAGAAATGGAACAATCATCAACGTCAGGAGGCC 6277 || | | || |||||| | |||||||| |||||||| || ||||| || |||||| Sbjct 6577 ATTTCTCTGGCAAATCACGTAGATTATGAAAAATGGAATAACCATCAGCGGGGGGAGGCG 6636 Query 6278 ACTGCGCCAGTGTTCAGGGTGATGGGACAATTCCTTGGATATCCAAACCTCATTGCGAGG 6337 | | || |||||| | || ||||| || ||||| || | || | || | | | Sbjct 6637 AATAGTCCTGTGTTCCGAGTAATGGGTCAGTTCCTAGGTTTGCCTGAGCTGTTCGTTCGC 6696 Query 6338 ACCCATGAGTTCTTTC 6353 || ||||||||||||| Sbjct 6697 ACTCATGAGTTCTTTC 6712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34406781415536