Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_031690.1 Length=11308 Score E Sequences producing significant alignments: (Bits) Value seq176488 104 2e-18 seq49187 78.8 7e-11 >seq176488 Length=2532 Score = 104 bits (114), Expect = 2e-18 Identities = 422/645 (65%), Gaps = 24/645 (4%) Strand=Plus/Plus Query 4288 CACCTGATTGTCCCCTTGAGCCAGAACTTTAACAAATGTATTGTTGCTTTTGGATGCTCT 4347 |||||| |||||||| || || || || |||| ||||| | | || | | ||| Sbjct 49 CACCTGGTTGTCCCCCTGTGCTAGGGTCTTGACAAGGGTATTTCGGGTCTTAGCTTCTCG 108 Query 4348 GTTGATGGCGAGAAGGTTTACAATACTCCATCCCTTTTGGCGCAATCCCTCTAATCCCCC 4407 || |||| | || ||||||||||| || ||||| | ||| ||||| | ||||| Sbjct 109 CAAGAGCACGAGCAAATTCACAATACTCCACCCTTTTTGTCTCAAACCCTCGAGACCCCC 168 Query 4408 CAATTGACCTTGCCAGCAATACAGT-TGTCCCGGTTTATTGACGATTCTTCCATCATG-A 4465 || |||| ||| || |||| | | | |||| ||| | | | | || | Sbjct 169 TTTCTGGCCTTCCCAACAG-ACAGGATAACTTGCTTTACTGATCAAGGTGTCCCCTTGTA 227 Query 4466 CAGCGCAGTTGATCAGGTCTA--TCCAGGTAATATATCAGTGATTTTTCAAAGAATTCAT 4523 | | || | |||||||||| |||| ||||| || || || || ||||| || | Sbjct 228 CTTC-CATTAAATCAGGTCTAGGTCCA--TAATAGATGAGACTGTTCTCGAAGAACTCGT 284 Query 4524 GAGTTC-GA-GATATTAGTTTTGG-ATACCCAAGAAACTTTCCCATCACATCAAATACAG 4580 | |||| || || | |||| ||| | ||||| ||||| |||||||| || |||| Sbjct 285 GCGTTCTGACGAAA--AGTTCTGGCAGACCCAC-AAACTGACCCATCACTCGGAAGACAG 341 Query 4581 GATTATTGGCTTTGGCTCGTTGATGGTTATTCCATTTGCTATAATCAAAGTGATTGGCGA 4640 | || ||||| | |||||||||||||||||||| ||||||| || ||||| | Sbjct 342 GGTTGTTGGCCAAACCACGTTGATGGTTATTCCATTTCTGGTAATCAACATGGTTGGCCA 401 Query 4641 TACAGATGTTCTCGTACCCTTCACT---TCCTTGACCTGAAGTTGTATCCATCATTTTCT 4697 ||| ||| ||| ||| | ||||||| | ||| | || | | ||||| Sbjct 402 CACAAATGGAGGAGTA---ATCAGTTTGTCCTTGATGTAAAGAACTGTCGAGAAGTTTCT 458 Query 4698 TTATGACGGTAGTCATATCATCTGCCATAGTTAGTCCTTTAAACAATGGAACAAAGTGAG 4757 || | || | || | ||||||||||| || ||||| || |||| ||| || | | Sbjct 459 TTGTAACCTTTGTGAGGTCATCTGCCATCGTGAGTCCGTTGAACAGTGGCACGTA-CAAT 517 Query 4758 TC-TTGATTAGGTGTTCTGTTATTACAAAATACTCTCGTAAAGCCCAGGTCAATAGAGCA 4816 || || || || ||||||||| ||||| || | | ||| ||| | || || | | Sbjct 518 TCTTTTATAAGATGTTCTGTTGAGACAAAGTATTGCCTTAACTTCCAAGACATGAG-GGA 576 Query 4817 TAAAATCTTCCTC-CAATCTTGATCTCTCGCTCTTTTCCTTTAAGTCCTATGATGAGATC 4875 || | | |||| | |||| | |||| ||| || ||||| | || ||||| | || Sbjct 577 GAAGAATTGCCTCTCTTTCTTTACTTCTCTCTCCTTCCCTTTCAAGCCAATGATCAAGTC 636 Query 4876 CTCAAGAGTTAGTCCATTGTCATTGACTTCTTGCAGGAACTTTTT 4920 || | || || |||||||||| |||| || |||| ||| Sbjct 637 TTCCTTGGGGAGGCCCTTGTCATTGATCTCTTCGAGAAACTCTTT 681 >seq49187 Length=20191 Score = 78.8 bits (86), Expect = 7e-11 Identities = 181/269 (67%), Gaps = 8/269 (3%) Strand=Plus/Minus Query 4513 AAAGAATTCATGAGTTCGAGATATTAGTTTTGGATACCCAAGAAACTTTCCCATCACATC 4572 |||||| |||||||| ||| | || | || | || || |||| ||||| || Sbjct 6711 AAAGAACTCATGAGTGCGAACGAACAGCTCAGGCAAACCTAGGAACTGACCCATTACTCG 6652 Query 4573 AAATACAGGATTATTGGCTTTGGCTCGTTGATGGTTATTCCATTTGCTATAATCAAAGTG 4632 || |||||| |||| || | | || ||||||||||||||||| |||||| | ||| Sbjct 6651 GAACACAGGACTATTCGCCTCCCCCCGCTGATGGTTATTCCATTTTTCATAATCTACGTG 6592 Query 4633 ATTGGCGATACAGAT---GTTCTCGT-ACCCTTCACTTCCTTGACCTGAAGTTGTATCCA 4688 ||| || | | | || ||| | || | || | ||| |||| | ||| |||| | Sbjct 6591 ATTTGCCAGAGAAATGGAGTTATAGTAATTCTGCCCTTGGTTGATC-GAA---CTATCTA 6536 Query 4689 TCATTTTCTTTATGACGGTAGTCATATCATCTGCCATAGTTAGTCCTTTAAACAATGGAA 4748 | ||||||| | || |||||| |||||| |||||||| | ||| || | || | Sbjct 6535 GGAGTTTCTTTGTCACCTTAGTCAGATCATCAGCCATAGTCAATCCCGAGAAAAGGGGCA 6476 Query 4749 CAAAGTGAGTCTTGATTAGGTGTTCTGTT 4777 || || ||| |||| ||| |||||| Sbjct 6475 CATAGAACTCCTTTATTAAGTGCTCTGTT 6447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35920463102336