Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_031691.1 Length=11238 Score E Sequences producing significant alignments: (Bits) Value seq133769 143 2e-30 seq283927 127 1e-25 seq90283 102 6e-18 >seq133769 Length=136818 Score = 143 bits (158), Expect = 2e-30 Identities = 593/910 (65%), Gaps = 28/910 (3%) Strand=Plus/Plus Query 3986 GGCAATTGATCATTGGATACACATGTAACTCGTGACCATCTTTTGGTTTCCAGTCCTCTT 4045 || ||||||||||||| ||| |||||||||||||||||||| || | || | | Sbjct 121795 GGTAATTGATCATTGGTTACGCATGTAACTCGTGACCATCTCTTTGCCTCTAAAGGTAGG 121854 Query 4046 ATGTTACCTCGAAACACTGGAACTTTGCCGTAACTTAAGAAATCAGCAGATCTCATGGTC 4105 ||||| |||| |||||||| || ||||| || | ||||||| | ||||||| Sbjct 121855 ATGTTTCCTCTGAACACTGGTACCTTGCCATAGGACAGAAAATCAGTGCTTTGCATGGTC 121914 Query 4106 TCATCCCTATTAATTATTAGTCCGAGTTTCCTCGTACCTTCCTCTATTTCTCTCATGATA 4165 ||||| || || |||| | ||| ||||| | || ||| | | | |||| || Sbjct 121915 TCATCTCTGTTGATTAGCAATCCCAGTTTACGTGTTCCTGCTGACACGGCAGTCATTATG 121974 Query 4166 TCATCATTATTCCTTGAT-ATATCATTGAGACACTGCTGAAGTTCTTGATCATTTCTAGT 4224 | || ||||| |||||| | || | | | || | ||||| | | | || Sbjct 121975 GCTTCGTTATT-CTTGATGACTTCTCGAATTCTTTCCTCGATTTCTTCTCCGATGGTTGT 122033 Query 4225 CTTATGTA-ATGAGTATTGTGTACATATGACTTGATTGTCACCCTGTGCCAATATTTGAA 4283 | | | | | || ||| | || || ||||| ||||| || || || ||| ||| || Sbjct 122034 TTCAGGGAGACGATACATGT-TGCAGATCACTTGGTTGTCCCCTTGCGCTAATGTTTTAA 122092 Query 4284 CCCTGGTGTTACGTCTGATGCTGGCTCGACGAATAATTAGCAGGTTGGTTATACTCCATC 4343 | |||||||| | | |||| | | | || || || || ||||| | Sbjct 122093 CTAAAGTGTTACGGGTTTTTGCCTCTCGCAGGAGTACGAGAAGATTTACAATGCTCCACC 122152 Query 4344 CTTTTTGCCTAAGCCCCTCTAGTCCACCAGATTGCCCCGACCAGCAGACTCTAT-GTCCC 4402 | ||||| || || || || || || || ||| || |||||| || || ||| Sbjct 122153 CCTTTTGTCTTAGGCCTTCGAGACCTCCTTTTTGTCCTTCCCAGCATACGGGATAGTCTG 122212 Query 4403 CTTT--TATT--AACTATCTGTCCATCGATAATCTCCATCAGATCTGGTCTTTGATTGTA 4458 |||| || | || |||| || | | || ||||| | ||| ||||| | || Sbjct 122213 CTTTGCTAATCAAAGTATC---CCCTTG--CATGTCCATTAAATCCGGTCTGGGTCCATA 122267 Query 4459 ATAAATCAGACTCTGTTCAAAGAATTCATGGGTTCTAGATATTAAGTTGGGGTA-TCCCA 4517 || | ||||| | || ||||| ||||| ||||| | ||||| |||| ||||| Sbjct 122268 GTAGACAAGACTGTTCTCGAAGAACTCATGCGTTCT-CACGAAAAGTTCTGGTAGTCCCA 122326 Query 4518 AAAATTGTCCCATTACCTTGAATGTGGGATTATTGGCTGCTCCCCTCTGATGATTGTTCC 4577 ||| || ||||| || |||| | ||| || || | || | ||||||||||||| Sbjct 122327 CAAACTGACCCATGACTCTGAAGACAGTATTGTTAGCCGAACCACGTTGATGATTGTTCC 122386 Query 4578 ATTTTTCATAATCTACATGGTTGGCAAAGCTTACAT-GATCA-TAAT-TATCCGTACCTT 4634 | |||| ||||| ||||||||||| | | | || ||| | || | | | ||| |||| Sbjct 122387 ACTTTTGGTAATCAACATGGTTGGCTA--CACAAATGGATGAGTAGTCTGTTCGT-CCTT 122443 Query 4635 GACCATATGTGTTGTCCATTAATTTTTTAGTCAAAACGGTGGAGTTATCTGCCATGGTTA 4694 || | | |||| | | ||| || || | ||| || || ||||| || | Sbjct 122444 GATGTAAAGAACTGTCGAGAAGTTTCTTTGTAACTTTTGTGAGGTCGTCCGCCATTGTAA 122503 Query 4695 GACCTTTAAATAATGGGACAAAATGCTTCTTGATCAGATATTCTGTTATTACGAAGTATT 4754 | || |||| | ||| ||| | || || || |||| ||||||| || ||||||| Sbjct 122504 GTCCACTAAACAGTGGTACATACAACTCTTTTATGAGATGTTCTGTTGAGACAAAGTATT 122563 Query 4755 CTCTCAACTCCCAGGACATGAGCGCAAAAAATCTTCCTTTTATTTTCAGTTCACGCTCTT 4814 || |||| ||| |||||||| | ||||||| || | | | |||| || | ||||| Sbjct 122564 GTCGTAACTTCCACGACATGAGAGAGAAAAATCGACCCTCTTTCTTCACCTCTCTCTCTT 122623 Query 4815 TGCCTTTAAGTCCGAT-AAGAAGT-TTCTCCTTATCCAGCCCCTGGTCATTGAT-GCTTC 4871 | || || |||||||| | |||| ||||| | || |||| ||||||||| |||| Sbjct 122624 TTCCCTTCAGTCCGATGATTAAGTCTTCTC--TGGGGAGGCCCTTGTCATTGATCTCTTC 122681 Query 4872 TCAAGAATTC 4881 |||||| || Sbjct 122682 -CAAGAACTC 122690 >seq283927 Length=152763 Score = 127 bits (140), Expect = 1e-25 Identities = 291/434 (67%), Gaps = 8/434 (2%) Strand=Plus/Plus Query 4432 CTCCATCAGATCTGGTCTTTGATTGTAATAAATCAGACTCTGTTCAAAGAATTCATGGGT 4491 ||||||||| || || | | | ||||||||| | ||| | ||||||||||| ||||| Sbjct 1262 CTCCATCAGGTCCGGACGTGGTCCGTAATAAATTAAACTGTTTTCAAAGAATTTGTGGGT 1321 Query 4492 TCTAGATATTAAGTTGGGGTATCCCAAAAATTGTCCCATTACCTTGAATGTGGGATTATT 4551 | || || ||||| || |||||| ||||| ||||| || |||| || || || Sbjct 1322 GCGAGTTAACAAGTTTGGCAGTCCCAAGAATTGCCCCATCACGCTGAACACCGGGTTGTT 1381 Query 4552 GGCTGCTCCCCTCTGATGATTGTTCCATTTTTCATAATCTACATGGTTGGCAAAGCTTAC 4611 || || || || ||||| ||||||||||| ||||| | ||||||||||| | | | Sbjct 1382 AGCATCT---CTTTGGTGATTATTCCATTTTTCGTAATCGATATGGTTGGCAATGGTAAT 1438 Query 4612 ATGATCATAATTATCCGTACCTTGACCATATGTGTTGTCCATTAATTTTTTAGTCAAAAC 4671 | |||| ||| ||||| || || ||||| | || ||||| | | | Sbjct 1439 CAATTGGTAATCGTCCTGCCCTTGTCCCGGTGAATTGTCTAACAACTTTTTTGCGACTTC 1498 Query 4672 GGTGGAGTTATCTGCCATGGTTAGACCTTTAAATAATGGGA--CAAAATGCTTCTTGATC 4729 | ||| ||||||||||| || ||| ||||| || | | ||| | ||| | Sbjct 1499 CATCAAGTCGTCTGCCATGGTGAGTCCTGCAAATAGGGGTATGTAGAAT--TCCTTTAGT 1556 Query 4730 AGATATTCTGTTATTACGAAGTATTCTCTCAACTCCCAGGACATGAGCGCAAAAAATCTT 4789 || | |||||| || ||||| |||| | | | ||||||||| || | || |||||| Sbjct 1557 AGGT-TTCTGTAATGACGAAATATTGTTGAAGATTCCAGGACATTAGGGAGAAGAATCTT 1615 Query 4790 CCTTTTATTTTCAGTTCACGCTCTTTGCCTTTAAGTCCGATAAGAAGTTTCTCCTTATCC 4849 |||| | || | ||||| || || ||||| | ||| || | || | || | ||| Sbjct 1616 CCTTCCTTCTTGATTTCACATTCCTTTCCTTTTAATCCAATGATGAGATCATCTCTGTCC 1675 Query 4850 AGCCCCTGGTCATT 4863 | || | |||||| Sbjct 1676 AATCCGTTGTCATT 1689 >seq90283 Length=1560 Score = 102 bits (112), Expect = 6e-18 Identities = 245/367 (67%), Gaps = 8/367 (2%) Strand=Plus/Minus Query 4520 AATTGTCCCATTACCTTGAATGTGGGATTATTGGCTGCTCCCCTCTGATGATTGTTCCAT 4579 ||||||||||| || | || | |||| || |||||||||||||| || ||||||||| Sbjct 551 AATTGTCCCATGACTCTTAAAGCTGGATCGTTAGCTGCTCCCCTCTGGTGGTTGTTCCAT 492 Query 4580 TTTTCATAATCTACATGGTTGGCAA-AGCTTACATG--ATCATAATTATCCGTACCTTGA 4636 |||||||| |||| |||||| |||| || | ||| | || | ||| | |||||| Sbjct 491 TTTTCATAGTCTATATGGTTTGCAAGAG---AAATGGAGTTGTAGTCATCTGATCCTTGA 435 Query 4637 CCATATGTGTTGTCCATTAATTTTTTAGTCAAAACGGTGGAGTTATCTGCCATGGTTAGA 4696 | || |||| ||| ||||| |||| ||| | | || ||||| |||| Sbjct 434 TTGATGGAATTATCCAGTAACTTTTTGGTCACTTTGGTCAAATCGTCCGCCATTGTTAAT 375 Query 4697 CCTTTAAATAATGGGACAAAATGCTTCTTGATCAGATATTCTGTTATTACGAAGTA--TT 4754 || || | || ||| | ||| |||||| || || || || |||||||| | Sbjct 374 CCAGAGAAGAGCGGAACATACAGCTCCTTGATGAGGTACTCGGTCGACACGAAGTACTGT 315 Query 4755 CTCTCAACTCCCAGGACATGAGCGCAAAAAATCTTCCTTTTATTTTCAGTTCACGCTCTT 4814 |||| || | ||| ||||||| | |||||||| || | | || | ||| || || | Sbjct 314 CTCTTAAGTTCCATAACATGAGGGAGAAAAATCTCCCCTCCTTCTTGACTTCCCGTTCCT 255 Query 4815 TGCCTTTAAGTCCGATAAGAAGTTTCTCCTTATCCAGCCCCTGGTCATTGATGCTTCTCA 4874 | || || || || || | || | || ||| || || ||||||||| || | Sbjct 254 TCCCCTTGAGCCCTATGACCAGGTCTTCTTTAGGGAGTCCGGACTCATTGATGATTGAGA 195 Query 4875 AGAATTC 4881 |||||| Sbjct 194 GGAATTC 188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35697394222176