Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_000947.1 Length=9760 Score E Sequences producing significant alignments: (Bits) Value seq33068 93.3 3e-15 >seq33068 Length=655 Score = 93.3 bits (102), Expect = 3e-15 Identities = 247/375 (66%), Gaps = 2/375 (1%) Strand=Plus/Plus Query 2062 CCAACAAAGAATCATCTAGTTGTTGGAAATAGTGGGGACTCCAAA-TACGTTGACATGCC 2120 || || |||| ||||||||| | ||| | ||| || |||||| ||| |||| |||| Sbjct 228 CCGACGAAGAGGCATCTAGTTATAGGAGCTTCTGGTGA-TCCAAAGTACATTGATCTGCC 286 Query 2121 GCCACAAGAAGGCCAATCCATGTATATAGCCAAAGCTGGTTTTTGCTACATGAACATCTT 2180 || || | || ||||||||||| || | |||| |||||| | || || || Sbjct 287 AGCATCTGAGGCAGAACGTATGTATATAGCAAAGGAAGGTTATTGCTATCTCAATATTTT 346 Query 2181 CTTGGCAATGCTTGTTAATGTGCGCAAGGAGGAAGCTAAGGCATTTACAAAAATGGTGAG 2240 | | ||||||||||| ||||| || | ||||| |||| || || |||||| | | Sbjct 347 CCTCGCAATGCTTGTAAATGTTAATGAGAACGAAGCAAAGGATTTCACCAAAATGATTCG 406 Query 2241 AGATGTGCTTATAAATCAGCTGGGGACATGGCCTACACTTTTGGACGTAGCAAGTGCATG 2300 ||||| | || ||| ||| |||||| || | |||| || |||| |||| Sbjct 407 TGATGTTTTGATCCCCATGCTTGGGCAGTGGCCTTCATTGATGGATGTTGCAACTGCAGC 466 Query 2301 CTATCTGCTGAAAGTGTTCTTTCCAGATGTCAGCAGTGCTGAGTTGCCACGTATAATGGT 2360 ||| | || || ||| ||| || | | ||||| || || | || | || Sbjct 467 ATATATTCTAGGCGTATTCCATCCTGAAACGCGATGCGCTGAATTACCCAGGATCCTTGT 526 Query 2361 TGATCACAAGACGAAAACTATGCATGTCGTAGACTCGTATGGTTCACTGAACACTGGTTA 2420 ||| ||| || |||| ||||||||| | || || ||||| ||||| | ||| || Sbjct 527 TGACCACGCTACACAAACCATGCATGTCATTGATTCTTATGGATCACTAACTGTTGGGTA 586 Query 2421 TCACATCCTAAAAGC 2435 |||| | || || || Sbjct 587 TCACGTGCTCAAGGC 601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31103916244544