Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_001517.1 Length=9640 Score E Sequences producing significant alignments: (Bits) Value seq33068 82.4 5e-12 >seq33068 Length=655 Score = 82.4 bits (90), Expect = 5e-12 Identities = 198/294 (67%), Gaps = 8/294 (3%) Strand=Plus/Plus Query 2043 GATGGCTATTGTTACATTAACATTTATCTGGCAATGTTAGTCAACATAAGCGAGGAAGAG 2102 || || ||||| || | || |||| || |||||| | || || | | ||| | || Sbjct 321 GAAGGTTATTGCTATCTCAATATTTTCCTCGCAATGCTTGTAAATGTTAATGAGAACGAA 380 Query 2103 GCTAAGGATTTCACAAAGAAAGTTCGGGACATCTTCATGCCAAAGCTTGGGAAGTGGCCA 2162 || ||||||||||| || | |||| || | || || || | ||||||| ||||||| Sbjct 381 GCAAAGGATTTCACCAAAATGATTCGTGATGTTTTGATCCCCATGCTTGGGCAGTGGCCT 440 Query 2163 ACGTTGATGGAT-TTG--GCTACAACATGTGCTCAACTTCGAATATTCCACCCTGATGTG 2219 | ||||||||| ||| || || ||| | | || | ||||||| ||||| | Sbjct 441 TCATTGATGGATGTTGCAACTGCAGCATATATT---CTAGGCGTATTCCATCCTGAAACG 497 Query 2220 C-ATGATGCAGAGCTGCCTCGTATTTTGGTGGATCACAACACACAAACGTGTCATGTGGT 2278 | ||| || || | || | || | || || ||| |||||||| ||||| | Sbjct 498 CGATG-CGCTGAATTACCCAGGATCCTTGTTGACCACGCTACACAAACCATGCATGTCAT 556 Query 2279 CGATTCATATGGATCAATTAGTACTGGGTATCACATTCTGAAAGCTGCAACTGT 2332 ||||| ||||||||| | | | |||||||||| | || || || | |||||| Sbjct 557 TGATTCTTATGGATCACTAACTGTTGGGTATCACGTGCTCAAGGCCGGAACTGT 610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30720075237824