Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_001671.1 Length=9924 Score E Sequences producing significant alignments: (Bits) Value seq33068 98.7 6e-17 >seq33068 Length=655 Score = 98.7 bits (108), Expect = 6e-17 Identities = 254/385 (66%), Gaps = 4/385 (1%) Strand=Plus/Plus Query 2277 CATTTGGTTATTGGGAATACAGGGGATCCAAAGTTAGTTGACTTACCCAAAACTGAAACT 2336 ||| | ||||| || | | || |||||||||| |||| | || | |||| | Sbjct 240 CATCTAGTTATAGGAGCTTCTGGTGATCCAAAGTACATTGATCTGCCAGCATCTGAGGCA 299 Query 2337 GGTAGGATGTGGATTGCAAAAGAGGGATATTGTTACATAAACATATTCTTCGCAATGCTT 2396 | | |||| || ||||| || || ||||| || | || || ||| ||||||||||| Sbjct 300 GAACGTATGTATATAGCAAAGGAAGGTTATTGCTATCTCAATATTTTCCTCGCAATGCTT 359 Query 2397 GTGAACGTCAGCGAAAAGGACGCCAAGGATTTCACAAAGTTTGTTAGGGATGAAATCATG 2456 || || || | || || || || ||||||||||| || | || | |||| | || Sbjct 360 GTAAATGTTAATGAGAACGAAGCAAAGGATTTCACCAAAATGATTCGTGATGTTTTGATC 419 Query 2457 CCACAGCTTGGGAAATGGCCAACAATGATGGATGTAGCAACTGCTTGCTATAAATTAGCA 2516 || ||||||| | ||||| || |||||||||| |||||||| |||| ||| Sbjct 420 CCCATGCTTGGGCAGTGGCCTTCATTGATGGATGTTGCAACTGCAGCATATATTCTAGGC 479 Query 2517 ATAATCTACCCTGATGTTAGAGATGCCC--AGCTGCCGAGAATTTTGGTTGATCACTCAG 2574 || || | ||||| | ||||| | | | || || || | ||||| ||| | Sbjct 480 GTATTCCATCCTGA--AACGCGATGCGCTGAATTACCCAGGATCCTTGTTGACCACGCTA 537 Query 2575 AACAAATCTTCCATGTGATCGACTCGTATGGTTCCATGACTACAGGTTATCATATCTTAA 2634 ||||| | | ||||| || || || ||||| || | ||| || ||||| | | | Sbjct 538 CACAAACCATGCATGTCATTGATTCTTATGGATCACTAACTGTTGGGTATCACGTGCTCA 597 Query 2635 AAGCAGGAACAGTTTCTCAGTTAAT 2659 | || ||||| || ||| ||||| Sbjct 598 AGGCCGGAACTGTCAATCATTTAAT 622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31628498953728