Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_001841.1 Length=10820 Score E Sequences producing significant alignments: (Bits) Value seq33068 168 5e-38 >seq33068 Length=655 Score = 168 bits (186), Expect = 5e-38 Identities = 329/479 (69%), Gaps = 8/479 (2%) Strand=Plus/Plus Query 2963 ATGGAAATTTCGTATACCCATGTTGTTGTGTGACACTTGATGATGGACAGCCTCTTGAAT 3022 ||||||||| || || ||||||| ||||| || | ||||||||| || | | | Sbjct 154 ATGGAAATTATATACACTCATGTTGCTGTGTAACGATGGATGATGGAACCCCGATGTACT 213 Query 3023 CAGAATTTAAGTTACCAACGAAGAATCACTTGGTAATTGGAAATTCAGGGGATCCCAAAT 3082 | || ||||| || ||||||| || | || || ||| ||| || ||||| || | Sbjct 214 CCGAGCTTAAGAGCCCGACGAAGAGGCATCTAGTTATAGGAGCTTCTGGTGATCCAAAGT 273 Query 3083 ATGTTGACATGCCACCAGAGATTAGCAAGAAA--ATGTACATTGCAAAGGATGGTTATTG 3140 | |||| ||||| || | || |||| ||||| || |||||||| |||||||| Sbjct 274 ACATTGATCTGCCAGCATC--TGAGGCAGAACGTATGTATATAGCAAAGGAAGGTTATTG 331 Query 3141 TTATGTAAACATCTTTCTAGCTATGCTTGTTAATGTAAACGAAGCCGAGGCTAAAGATTT 3200 ||| | || || || || || |||||||| ||||| || || ||| || || ||||| Sbjct 332 CTATCTCAATATTTTCCTCGCAATGCTTGTAAATGTTAATGAGAACGAAGCAAAGGATTT 391 Query 3201 CACTAAACAAGTGCGAGATGTGTTAATGGAAAAA-TTGGGCAAATGGCCAACAATGTTTG 3259 ||| ||| | || ||||| || || | ||||||| ||||| || || | | Sbjct 392 CACCAAAATGATTCGTGATGTTTTGATCCCCATGCTTGGGCAG-TGGCCTTCATTGATGG 450 Query 3260 ACGTAGCCACTGCATG-TGCATTCATGTCAGTATTCTATCCTGAAACAAGAAATGCTGAA 3318 | || || |||||| | |||| | | |||||| |||||||||| || |||||| Sbjct 451 ATGTTGCAACTGCAGCATATATTCTAGGC-GTATTCCATCCTGAAACGCGATGCGCTGAA 509 Query 3319 CTTCCAAGAATTCTAGTTGATCACTCAACTAAAACCATGCATGTTGTGGATTCTTTTGGC 3378 | || || || || ||||| ||| | || ||||||||||||| | ||||||| ||| Sbjct 510 TTACCCAGGATCCTTGTTGACCACGCTACACAAACCATGCATGTCATTGATTCTTATGGA 569 Query 3379 TCATTAAGCACAGGATATCATGTCCTGAAAGCAAACACAGTGAGTCAATTAATTCAGTT 3437 ||| ||| || ||||| || || || || || || | ||| |||||||| || Sbjct 570 TCACTAACTGTTGGGTATCACGTGCTCAAGGCCGGAACTGTCAATCATTTAATTCAATT 628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34494511803904