Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_002600.1 Length=9709 Score E Sequences producing significant alignments: (Bits) Value seq33068 208 5e-50 >seq33068 Length=655 Score = 208 bits (230), Expect = 5e-50 Identities = 438/644 (68%), Gaps = 12/644 (2%) Strand=Plus/Plus Query 1788 AAGTACCAAATCAGAAACTCACCAAATTGTACGAGGAAACTGGCTATTGGCAATTTGATT 1847 |||||| | | |||||| |||||| |||| | || |||| || ||| |||||| Sbjct 3 AAGTACGTAGTGCGAAACTTTCCAAATGGTACTCGTAAGTTGGCCATAGGCTCATTGATT 62 Query 1848 GTGCCTATGAGTTTGGAGAGAGCACGGAACGCACTAATCGGTGAGTCAGTTGAGAGGTTA 1907 || || | | |||||| || ||||| | |||||| | || ||| |||||| | Sbjct 63 GTACCACTCAATTTGGATAGGGCACGCACTGCACTACTTGGAGAGAGCATTGAGAAGAAG 122 Query 1908 CCAGTCACAGAGGCATGTGTATC--AAGAGTCAATGGCGCATTCATGCACGTAGCAAGCT 1965 ||| ||||| || ||||| || || || ||||| | || ||| | ||| Sbjct 123 CCACTCACATCAGCGTGTGTCTCCCAACAG--AATGGAAATTATATACACTCATGTTGCT 180 Query 1966 GTGTAACGTCAGACAATGGAAGTGCACATTTCTCACCATTGTACAGCCCAACTAAGAGAC 2025 |||||||| || |||||| | | ||| | | ||||| || ||||| | Sbjct 181 GTGTAACGATGGATGATGGAACCCCGATGTACTCCGAGCTTAAGAGCCCGACGAAGAGGC 240 Query 2026 ATTTAGTGGTAGGCACAACAGGGGACTCAAAATATATTGATTTACCAGCTACTGAGTCGG 2085 || |||| |||| | | || || |||| || |||||| | ||||| ||||| | | Sbjct 241 ATCTAGTTATAGGAGCTTCTGGTGATCCAAAGTACATTGATCTGCCAGCATCTGAGGCAG 300 Query 2086 ATAAAATGTATGTCGCGAAAGAAGGATACTGTTACATTAATATTTTCTTAGCGATGCTAG 2145 | |||||| | || || ||||| || || || | ||||||||| | || ||||| | Sbjct 301 AACGTATGTATATAGCAAAGGAAGGTTATTGCTATCTCAATATTTTCCTCGCAATGCTTG 360 Query 2146 TGAATGTGAATGAAGACAGTGCCAAGGATTTCACAAAGATGATACGCGATACAATCGTGC 2205 | ||||| ||||| || || ||||||||||| || ||||| || ||| | | | Sbjct 361 TAAATGTTAATGAGAACGAAGCAAAGGATTTCACCAAAATGATTCGTGATGTTTTGATCC 420 Query 2206 CTATG-TTGGGAACATGGCCAAGTATGATGGATGTGGCAACAGCTTGTTACATACTAACA 2264 | ||| ||||| | ||||| |||||||||| ||||| || || || ||| Sbjct 421 CCATGCTTGGGCA-GTGGCCTTCATTGATGGATGTTGCAACTGCAGCATATATTCTAGGC 479 Query 2265 GTTTTCCATCCTGAGACAAAAAGCGCAGAGCTACCCAGAATCCTTGTGGATCATAC-AAA 2323 || ||||||||||| || | |||| || ||||||| |||||||| || || | | | Sbjct 480 GTATTCCATCCTGAAACGCGATGCGCTGAATTACCCAGGATCCTTGTTGACCACGCTACA 539 Query 2324 CAAGACCATGCATGTTATCGATTCATTTGGTTCAATCTCTACAGGATATCATATTCTCAA 2383 ||| ||||||||||| || ||||| | ||| ||| | || || ||||| | ||||| Sbjct 540 CAA-ACCATGCATGTCATTGATTCTTATGGATCACTAACTGTTGGGTATCACGTGCTCAA 598 Query 2384 GGCTGGAACAGTGTCA--CAATTGATCCACTTTGCCTCCAATGA 2425 ||| ||||| ||||| || || || || |||||||| ||||| Sbjct 599 GGCCGGAAC--TGTCAATCATTTAATTCAATTTGCCTCAAATGA 640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30940783816688