Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_003397.1 Length=9992 Score E Sequences producing significant alignments: (Bits) Value seq33068 297 1e-76 >seq33068 Length=655 Score = 297 bits (328), Expect = 1e-76 Identities = 431/606 (71%), Gaps = 2/606 (0%) Strand=Plus/Plus Query 2136 AGTTGGCAATTGGATCTCTGATAGTTCCTTTGAGCTTGGAGCGTGCGCGAGCAGCTCTAC 2195 ||||||| || || || |||| || || | | ||||| | || || | || |||| Sbjct 40 AGTTGGCCATAGGCTCATTGATTGTACCACTCAATTTGGATAGGGCACGCACTGCACTAC 99 Query 2196 AAGGAAAGAGTGTTGAAACTGCACCATTGACAGTAGCATGCGTAGCAAAGCAAAATGGCA 2255 ||| |||| |||| | ||| | ||| ||| || || | | || ||||| | Sbjct 100 TTGGAGAGAGCATTGAGAAGAAGCCACTCACATCAGCGTGTGTCTCCCAACAGAATGGAA 159 Query 2256 ATTTTGTATATCCATGCTGTTGTGTAACTTTGGATGATGGAACACCAATGTATTCTGAAC 2315 ||| | || | |||| || |||||||| ||||||||||||| || ||||| || || | Sbjct 160 ATTATATACACTCATGTTGCTGTGTAACGATGGATGATGGAACCCCGATGTACTCCGAGC 219 Query 2316 TCAAGAGTCCAACTAAGAGACACCTCGTGGTTGGTACATCTGGAGATCCTAAATACATTG 2375 | ||||| || || ||||| || || || | || | ||||| ||||| || ||||||| Sbjct 220 TTAAGAGCCCGACGAAGAGGCATCTAGTTATAGGAGCTTCTGGTGATCCAAAGTACATTG 279 Query 2376 ATCTTCCACAAACTGATGAAGATAGGATGTACATTGCCAAAGAAGGCTATTGTTACTTGA 2435 |||| ||| | |||| | ||| | ||||| || || || ||||| ||||| || | | Sbjct 280 ATCTGCCAGCATCTGAGGCAGAACGTATGTATATAGCAAAGGAAGGTTATTGCTATCTCA 339 Query 2436 ATATCTTTTTGGCTATGCTTGTTAATGTCAATGAAAAAGAGGCTAAAGATTTCACAAAGA 2495 |||| || | || |||||||| ||||| ||||| || || || || |||||||| || | Sbjct 340 ATATTTTCCTCGCAATGCTTGTAAATGTTAATGAGAACGAAGCAAAGGATTTCACCAAAA 399 Query 2496 TGGTCAGGGATGTCATAATACCTATG-TTGGGAACATGGCCCACAATGCATGATCTTGCA 2554 || | | ||||| | || || ||| ||||| | ||||| || || ||| ||||| Sbjct 400 TGATTCGTGATGTTTTGATCCCCATGCTTGGGCA-GTGGCCTTCATTGATGGATGTTGCA 458 Query 2555 ACAGCGGTTTATATTCTTACAGTGTTCCATCCGGAAACCAGAAATGCAGAATTACCTCGC 2614 || || | |||||||| || |||||||| ||||| || || |||||||| | Sbjct 459 ACTGCAGCATATATTCTAGGCGTATTCCATCCTGAAACGCGATGCGCTGAATTACCCAGG 518 Query 2615 ATCCTTGTTGATCATGCGAGTCAGACAATGCATGTGATTGATTCATTTGGATCTCTCACC 2674 ||||||||||| || || | || || |||||||| |||||||| | |||||| || || Sbjct 519 ATCCTTGTTGACCACGCTACACAAACCATGCATGTCATTGATTCTTATGGATCACTAACT 578 Query 2675 ACTGGGTATCATGTGTTAAAGGCCGGGACAATTAATCAATTAATTCACTTCGCGGCCGAT 2734 ||||||||| ||| | |||||||| || | ||||| |||||||| || || | || Sbjct 579 GTTGGGTATCACGTGCTCAAGGCCGGAACTGTCAATCATTTAATTCAATTTGCCTCAAAT 638 Query 2735 GATTTG 2740 ||| || Sbjct 639 GATCTG 644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31846008857536