Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_003536.1 Length=9584 Score E Sequences producing significant alignments: (Bits) Value seq33068 96.9 2e-16 >seq33068 Length=655 Score = 96.9 bits (106), Expect = 2e-16 Identities = 222/330 (67%), Gaps = 6/330 (2%) Strand=Plus/Plus Query 2099 ATGTACATAGCAAAAGATGGGTATTGCCATATTAATATATTCTTTGCTATGTTGGTGAAT 2158 ||||| |||||||| || || |||||| || | ||||| ||| | || ||| | || ||| Sbjct 306 ATGTATATAGCAAAGGAAGGTTATTGCTATCTCAATATTTTCCTCGCAATGCTTGTAAAT 365 Query 2159 GTGTCGGAAGATAAATCAAAGGATTTCACGAAAATGGTGCGGGATCAGATAATGCCAAAG 2218 || || | || ||||||||||||| |||||| | || ||| | || || | | Sbjct 366 GTTAATGAGAACGAAGCAAAGGATTTCACCAAAATGATTCGTGATGTTTTGATCCCCATG 425 Query 2219 TTAGGTCAGTGGCCAACAATGCTAGATGTTGCAACAGC-GTGTTGGTACTTAACAGTTTG 2277 | || |||||||| || || | ||||||||||| || | | | | || || | Sbjct 426 CTTGGGCAGTGGCCTTCATTGATGGATGTTGCAACTGCAGCATATATTC-TAGGCGTATT 484 Query 2278 GTTTCCTGACACACTCAGTGCTGAACTTCCAAGAATACTTGTTGATCACAAGTTAAGC-- 2335 |||||| || | | |||||| | || || || |||||||| ||| | || | Sbjct 485 CCATCCTGAAACGCGATGCGCTGAATTACCCAGGATCCTTGTTGACCAC--GCTACACAA 542 Query 2336 ACCATGCACGTTCTGGATTCGTATGGTTCAATAAGCACAGGATACCATGTTCTTAAGGCA 2395 |||||||| || | ||||| ||||| ||| ||| || || || || || ||||| Sbjct 543 ACCATGCATGTCATTGATTCTTATGGATCACTAACTGTTGGGTATCACGTGCTCAAGGCC 602 Query 2396 AACATTGTTTCCCAATTAATCAAATTTGCC 2425 | ||| || ||||| |||||||| Sbjct 603 GGAACTGTCAATCATTTAATTCAATTTGCC 632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30540949434688