Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_004010.1 Length=9848 Score E Sequences producing significant alignments: (Bits) Value seq33068 80.6 2e-11 >seq33068 Length=655 Score = 80.6 bits (88), Expect = 2e-11 Identities = 204/308 (66%), Gaps = 2/308 (1%) Strand=Plus/Plus Query 1919 ATGGAAACTACATATACCCGTGTTGTTGCACAACATTTGAAGATGGTAGTGCCATAGAAT 1978 ||||||| || ||| || | ||||| || ||| | || ||||| | | || | | Sbjct 154 ATGGAAATTATATACACTCATGTTGCTGTGTAACGATGGATGATGGAACCCCGATGTACT 213 Query 1979 CGACAGCATATGCTCCC-ACTAAGCGGCACTTAGTCATTGGAAACACTGGCGACACAAAG 2037 | ||| || | ||| || ||| |||| |||| || ||| |||| || ||||| Sbjct 214 CCG-AGCTTAAGAGCCCGACGAAGAGGCATCTAGTTATAGGAGCTTCTGGTGATCCAAAG 272 Query 2038 TTTGTTGATTTGCCAAAAGTAGAAACGGATCTACTTGATATGGCCATTGATGGATATTGC 2097 | ||||| ||||| | || | || | | |||| || | || || |||||| Sbjct 273 TACATTGATCTGCCAGCATCTGAGGCAGAACGTATGTATATAGCAAAGGAAGGTTATTGC 332 Query 2098 TACATAAATGTATTTCTTGCCATGTTGATCAACATCCGTGAAGATGAAGCAAAAGATTTC 2157 || | ||| | || || || ||| | | || | ||| | |||||||| |||||| Sbjct 333 TATCTCAATATTTTCCTCGCAATGCTTGTAAATGTTAATGAGAACGAAGCAAAGGATTTC 392 Query 2158 ACTAAGAAGGTGCGAGACATTTTTATCCCCAAACTTGGGAAGTGGCCTTCAATGCTTGAT 2217 || || | | | || || |||| ||||||| |||||| ||||||||||| || | ||| Sbjct 393 ACCAAAATGATTCGTGATGTTTTGATCCCCATGCTTGGGCAGTGGCCTTCATTGATGGAT 452 Query 2218 TTGGCAAC 2225 | ||||| Sbjct 453 GTTGCAAC 460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31385399649472