Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_004013.1 Length=9465 Score E Sequences producing significant alignments: (Bits) Value seq33068 324 8e-85 >seq33068 Length=655 Score = 324 bits (358), Expect = 8e-85 Identities = 447/624 (72%), Gaps = 6/624 (1%) Strand=Plus/Plus Query 1650 TCCAAATGGTCAAAGAAAGCTAGCTATTGGTTCTCTGGTCGTTCCACTTGACTTGGATAG 1709 |||||||||| | ||| | || || || || || | || ||||| | |||||||| Sbjct 23 TCCAAATGGTACTCGTAAGTTGGCCATAGGCTCATTGATTGTACCACTCAATTTGGATAG 82 Query 1710 AGCAAGAGTTTCAATGCAGGGTGAGGGTGTGGCAAGAAAACCACTGACAAAAGCATGTGT 1769 ||| | | || | | || ||| | | | | || ||||| ||| ||| ||||| Sbjct 83 GGCACGCACTGCACTACTTGGAGAGAGCATTGAGAAGAAGCCACTCACATCAGCGTGTGT 142 Query 1770 TTCGGTTCTTGAGAA---AAACTTTGTTTACCCATGCTGCTGTGTTACATTAGACAATGG 1826 || | |||| ||| | | | || |||| |||||||| || | || |||| Sbjct 143 CTCCCAAC---AGAATGGAAATTATATACACTCATGTTGCTGTGTAACGATGGATGATGG 199 Query 1827 ACAGCCTCTCTACTCAGAATACAAGAGTCCAACTAAGAGGCACTTAGTTGTCGGCTCATC 1886 | || | ||||| || ||||| || || |||||||| ||||| | || | || Sbjct 200 AACCCCGATGTACTCCGAGCTTAAGAGCCCGACGAAGAGGCATCTAGTTATAGGAGCTTC 259 Query 1887 AGGTGACCCCAAATACATTGACCTTCCAGCAACTGACTCAGACCGGATGTACATTGCAAA 1946 ||||| || || |||||||| || |||||| |||| |||| || ||||| || ||||| Sbjct 260 TGGTGATCCAAAGTACATTGATCTGCCAGCATCTGAGGCAGAACGTATGTATATAGCAAA 319 Query 1947 GGAAGGATACTGTTATCTAAATATTTTCCTTGCAATGCTTGTGAACGTCAATGAAGAAGA 2006 |||||| || || ||||| ||||||||||| ||||||||||| || || ||||| | || Sbjct 320 GGAAGGTTATTGCTATCTCAATATTTTCCTCGCAATGCTTGTAAATGTTAATGAGAACGA 379 Query 2007 GGCTAAGGACTTCACCAAAATGGTTCGAGATGTTTTGGTACCAAAACTTGGAACTTGGCC 2066 || ||||| |||||||||||| |||| ||||||||| | || | ||||| ||||| Sbjct 380 AGCAAAGGATTTCACCAAAATGATTCGTGATGTTTTGATCCCCATGCTTGGGCAGTGGCC 439 Query 2067 GACAATGATGGATGTTGCCACTGCAGCATATATGCTCTCAGTTTTTCACCCGGAAACAAA 2126 || ||||||||||||| |||||||||||||| || || || || || ||||| Sbjct 440 TTCATTGATGGATGTTGCAACTGCAGCATATATTCTAGGCGTATTCCATCCTGAAACGCG 499 Query 2127 GAGTGCTGAATTGCCAAGAATCCTTGTTGATCACGAGTCGCAGACAATGCATGTCATTGA 2186 | |||||||| || || ||||||||||| |||| | || || |||||||||||||| Sbjct 500 ATGCGCTGAATTACCCAGGATCCTTGTTGACCACGCTACACAAACCATGCATGTCATTGA 559 Query 2187 CTCTTTTGGATCTTTGAACACAGGGTACCACGTACTTAAAGCTGGAACAGTCAACCAACT 2246 |||| |||||| | | ||||| ||||| || || || ||||| ||||| || | Sbjct 560 TTCTTATGGATCACTAACTGTTGGGTATCACGTGCTCAAGGCCGGAACTGTCAATCATTT 619 Query 2247 AATCCAGTTTGCATCAAACGATCT 2270 ||| || ||||| ||||| ||||| Sbjct 620 AATTCAATTTGCCTCAAATGATCT 643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30160307103024