Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_004039.1 Length=9585 Score E Sequences producing significant alignments: (Bits) Value seq33068 96.9 2e-16 >seq33068 Length=655 Score = 96.9 bits (106), Expect = 2e-16 Identities = 276/421 (66%), Gaps = 10/421 (2%) Strand=Plus/Plus Query 1911 AATTATAAATACCCGTGCTGCTGCGTGACATTGGATGATGGCACTCCACTGTATTCAACA 1970 ||||||| | || | || ||||| || || |||||||||| || || |||| || Sbjct 159 AATTATATACACTCATGTTGCTGTGTAACGATGGATGATGGAACCCCGATGTACTCCGAG 218 Query 1971 TTTATTATGCCAACCAAGAACCATCTTGTGATTGGTAACTCAGGTGATCCAAAATTCCTA 2030 ||| | || || |||| ||||| || || || || ||||||||||| | | | Sbjct 219 CTTAAGAGCCCGACGAAGAGGCATCTAGTTATAGGAGCTTCTGGTGATCCAAAGTACATT 278 Query 2031 GACTTACCTGCAGACATTAGCA-CACAAATGTACATAGCCAAATCAGGATACTGCTACAT 2089 || | || ||| | ||| || ||||| ||||| || ||| || ||||| | Sbjct 279 GATCTGCCAGCA-TCTGAGGCAGAACGTATGTATATAGCAAAGGAAGGTTATTGCTATCT 337 Query 2090 AAATATATTCTTGGCTATGCTTGTGAATGTAGATGAGTCTGATGCCAAAGACTTCACTAA 2149 ||||| ||| | || |||||||| ||||| ||||| || || || || ||||| || Sbjct 338 CAATATTTTCCTCGCAATGCTTGTAAATGTTAATGAGAACGAAGCAAAGGATTTCACCAA 397 Query 2150 GAAGGTTAGAGACATCATAGTGCCAGATCTAGGTGAGTGGCCAACTCTGATTGATGTGGC 2209 | | || | || | | | || || || ||||||| | |||| ||||| || Sbjct 398 AATGATTCGTGATGTTTTGATCCCCATGCTTGGGCAGTGGCCTTCATTGATGGATGTTGC 457 Query 2210 AACAAGTTGCAG----TCTACTTAGTGCATTTTATCCTGCTACAAGTGCCGCCGAGCTTC 2265 ||| ||||| | | || | | ||| |||||| || | ||| || | | Sbjct 458 AAC----TGCAGCATATATTCTAGGCGTATTCCATCCTGAAACGCGATGCGCTGAATTAC 513 Query 2266 CAAGAATTTTGGTTGATCACGATCTCAAAACAATGCACGTAATTGATTCTTATGGCTCAC 2325 | || || | ||||| |||| | |||| ||||| || |||||||||||||| |||| Sbjct 514 CCAGGATCCTTGTTGACCACGCTACACAAACCATGCATGTCATTGATTCTTATGGATCAC 573 Query 2326 T 2326 | Sbjct 574 T 574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30544148109744