Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_004573.1 Length=9899 Score E Sequences producing significant alignments: (Bits) Value seq33068 102 5e-18 >seq33068 Length=655 Score = 102 bits (112), Expect = 5e-18 Identities = 197/288 (68%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 1948 TGTTGCTGCACAACATTGGATGATGGGAGTGCGATTGAGTCAACAGCATATGCTCCT-AC 2006 |||||||| ||| |||||||||| | |||| | || ||| || | || || Sbjct 174 TGTTGCTGTGTAACGATGGATGATGGAACCCCGATGTACTCCG-AGCTTAAGAGCCCGAC 232 Query 2007 CAAGAGGCATTTAGTTATTGGAAACTCTGGTGACACAAAATACGTTGATTTGCCAAAGGG 2066 ||||||||| ||||||| ||| |||||||| |||| ||| ||||| ||||| Sbjct 233 GAAGAGGCATCTAGTTATAGGAGCTTCTGGTGATCCAAAGTACATTGATCTGCCAGCATC 292 Query 2067 AGAAACTGATTTGTTATACATGGCAATTGATGGATACTGCTATATCAACATCTTTTTGGC 2126 || | || | || || |||| || || || |||||| |||| || || | || Sbjct 293 TGAGGCAGAACGTATGTATATAGCAAAGGAAGGTTATTGCTATCTCAATATTTTCCTCGC 352 Query 2127 TATGCTTATCAATGTTCGGGAGGATGAAGCAAAAGATTTTACAAAGAAAGTGCGGGATAT 2186 |||||| | |||||| ||| | |||||||| ||||| || || | | || ||| | Sbjct 353 AATGCTTGTAAATGTTAATGAGAACGAAGCAAAGGATTTCACCAAAATGATTCGTGATGT 412 Query 2187 TTTTATCCCCAAATTAGGTAAGTGGCCTTCAATGCTTGATTTGGCCAC 2234 ||| ||||||| | || ||||||||||| || | ||| | || || Sbjct 413 TTTGATCCCCATGCTTGGGCAGTGGCCTTCATTGATGGATGTTGCAAC 460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31548532077328