Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_005778.1 Length=9711 Score E Sequences producing significant alignments: (Bits) Value seq33068 114 8e-22 >seq33068 Length=655 Score = 114 bits (126), Expect = 8e-22 Identities = 299/447 (67%), Gaps = 18/447 (4%) Strand=Plus/Plus Query 1927 TATACATCCATGTTGCTGTGTCACTTATGATGATGGATCACCAGTTTTGTCTGAGTTCAA 1986 |||||| ||||||||||||| || ||||||||| | || | | || ||| | || Sbjct 164 TATACACTCATGTTGCTGTGTAACGATGGATGATGGAACCCCGATGTACTCCGAGCTTAA 223 Query 1987 AGCCCCAACAAAGAACCACCTCGTACTTGGCAACACGGGTGACTCTAAATATTTGGATCT 2046 ||| || |||| || || || | || | ||||| | || || | ||||| Sbjct 224 GAGCCCGACGAAGAGGCATCTAGTTATAGGAGCTTCTGGTGATCCAAAGTACATTGATCT 283 Query 2047 ACCGGCTGAAATTAGTGAAAA--TTTGTACATAGCAAAGGAGGGTTATTGTTATGTGAAT 2104 || || | | || | || | |||| ||||||||||| |||||||| ||| | ||| Sbjct 284 GCCAGC--ATCTGAGGCAGAACGTATGTATATAGCAAAGGAAGGTTATTGCTATCTCAAT 341 Query 2105 ATTTTCTTAGCTATGTTGGTTGATGTGGATGAGAAGGATGCAAAGGATTTCACTAAGTGG 2164 |||||| | || ||| | || |||| ||||||| || |||||||||||||| || | Sbjct 342 ATTTTCCTCGCAATGCTTGTAAATGTTAATGAGAACGAAGCAAAGGATTTCACCAAAATG 401 Query 2165 GTGCGAGACATAATTGTACAGCA-GTTAGGACAGTGGCCAACGATGACTGATGTTGCACT 2223 | || || | ||| | || | | || |||||||| | ||| ||||||||| Sbjct 402 ATTCGTGATGT-TTTGATCCCCATGCTTGGGCAGTGGCCTTCATTGATGGATGTTGCAAC 460 Query 2224 TGCTTGTTACCAGCT-TTC-AGTGTTATTCCCATC----AACTCGATCGGCTGAATTGCC 2277 ||| | || | ||| || |||| ||||| ||| |||| |||||||| || Sbjct 461 TGC-----AGCATATATTCTAGGCGTATT-CCATCCTGAAACGCGATGCGCTGAATTACC 514 Query 2278 GAGAATCTTGGTTGATCACAAGACTATGACAATGCATGTGATTGATTCATTTGGGTCATT 2337 || ||| | ||||| ||| || || |||||||| |||||||| | ||| ||| | Sbjct 515 CAGGATCCTTGTTGACCACGCTACACAAACCATGCATGTCATTGATTCTTATGGATCACT 574 Query 2338 GACAACAGGCTATCATGTTTTAAAGGC 2364 || || ||||| || | ||||| Sbjct 575 AACTGTTGGGTATCACGTGCTCAAGGC 601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30947181166800