Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_007147.1 Length=9611 Score E Sequences producing significant alignments: (Bits) Value seq33068 102 5e-18 >seq33068 Length=655 Score = 102 bits (112), Expect = 5e-18 Identities = 222/324 (69%), Gaps = 10/324 (3%) Strand=Plus/Plus Query 1920 GTATGTATATAGCTAAGGATGGTTATTGCTACCTCAATATATTTTTGGC--CGCTATGAT 1977 ||||||||||||| ||||| ||||||||||| |||||||| || | || ||| || | Sbjct 304 GTATGTATATAGCAAAGGAAGGTTATTGCTATCTCAATATTTTCCTCGCAATGCT-TG-T 361 Query 1978 CAATGTGAACGAAGACTCAGCAAAGGATTATACTAAGTTCATTAGAGATGAGTTAATCGA 2037 ||||| || || || ||||||||||| || || | ||| | |||| || ||| Sbjct 362 AAATGTTAATGAGAACGAAGCAAAGGATTTCACCAAAATGATTCGTGATGTTTTGATCCC 421 Query 2038 GCGACTCGGCAAATGGCCCAAAATGAAGGACGTTGCAACTGCTTGTTACATTCTATCAGT 2097 || || | ||||| | ||| ||| ||||||||||| || |||||| || Sbjct 422 CATGCTTGGGCAGTGGCCTTCATTGATGGATGTTGCAACTGCAGCATATATTCTAGGCGT 481 Query 2098 AATGTATCCAGAA--GTGAAGAACGCTGAATTACCACAAATATTGGTTGATCATG-AAAA 2154 | | |||| ||| | || | |||||||||||| || | ||||| || | | | Sbjct 482 ATTCCATCCTGAAACGCGATG--CGCTGAATTACCCAGGATCCTTGTTGACCACGCTACA 539 Query 2155 CAAGACAATGCACGTGGTTGATTCTTACGGTTCTCTTAGCACAGGTTTTCACACACTCAA 2214 ||| || ||||| || |||||||||| || || || | || | |||| ||||| Sbjct 540 CAA-ACCATGCATGTCATTGATTCTTATGGATCACTAACTGTTGGGTATCACGTGCTCAA 598 Query 2215 GGCAAACACTGTTAACCAGTTAAT 2238 ||| ||||| || || ||||| Sbjct 599 GGCCGGAACTGTCAATCATTTAAT 622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30627313661200