Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_007216.1 Length=9695 Score E Sequences producing significant alignments: (Bits) Value seq33068 340 1e-89 >seq33068 Length=655 Score = 340 bits (376), Expect = 1e-89 Identities = 435/597 (73%), Gaps = 2/597 (0%) Strand=Plus/Plus Query 1872 ATAGTACCTCTAGATTTTGAACGTGCTCGTCTAGCACTTCAAGGAAAGAGTATTAAGAGA 1931 || ||||| || |||| || | || || ||||| | ||| |||| ||| ||| | Sbjct 60 ATTGTACCACTCAATTTGGATAGGGCACGCACTGCACTACTTGGAGAGAGCATTGAGA-A 118 Query 1932 GAACCAATTACCATG-GCTTGCATCTCAAAACAAGATGGAAATTTCATATATCCTTGCTG 1990 ||| | | | ||| || || |||| |||| ||||||||| ||| | | || || Sbjct 119 GAAGCCACTCACATCAGCGTGTGTCTCCCAACAGAATGGAAATTATATACACTCATGTTG 178 Query 1991 TTGTGTCACACATGATGATGGGAAGCCTTTCTATTCTGATCTTAAAAGTCCAACAAAAAG 2050 ||||| || |||||||| | || | || || || ||||| || || || || || Sbjct 179 CTGTGTAACGATGGATGATGGAACCCCGATGTACTCCGAGCTTAAGAGCCCGACGAAGAG 238 Query 2051 ACATCTTGTTATTGGCACTTCTGGTGATCCTAAATACATAGATTTACCAGCAACCGACAC 2110 ||||| ||||| || ||||||||||||| || ||||| ||| | |||||| | || | Sbjct 239 GCATCTAGTTATAGGAGCTTCTGGTGATCCAAAGTACATTGATCTGCCAGCATCTGAGGC 298 Query 2111 AGACAGGATGTATATAGCAAAAGAAGGTTTTTGTTATCTAAACATCTTTCTTGCCATGTT 2170 ||| | |||||||||||||| ||||||| ||| ||||| || || || || || ||| | Sbjct 299 AGAACGTATGTATATAGCAAAGGAAGGTTATTGCTATCTCAATATTTTCCTCGCAATGCT 358 Query 2171 GGTAAATGTTAATGAAGATGAAGCAAAGGATTTCACAAAAATGGTTCGTGATGTCATAGT 2230 |||||||||||||| | ||||||||||||||||| |||||| |||||||||| | | Sbjct 359 TGTAAATGTTAATGAGAACGAAGCAAAGGATTTCACCAAAATGATTCGTGATGTTTTGAT 418 Query 2231 TCCAAAGCTCGGTCAATGGCCAACAATGATAGATGTGGCAACAGCAGTTTACATGCTGAC 2290 || | ||| || || ||||| || |||| ||||| ||||| |||| || || || Sbjct 419 CCCCATGCTTGGGCAGTGGCCTTCATTGATGGATGTTGCAACTGCAGCATATATTCTAGG 478 Query 2291 AGTTTTCCATCCAGAAACTAGGAATGCTGAACTACCACGAATCCTAGTTGACCATGCTTG 2350 || |||||||| ||||| | |||||| |||| | ||||| |||||||| ||| Sbjct 479 CGTATTCCATCCTGAAACGCGATGCGCTGAATTACCCAGGATCCTTGTTGACCACGCTAC 538 Query 2351 TCAAACAATGCATGTGATTGATTCATTTGGCTCCCTGACAGTTGGATATCATGTGTTGAA 2410 ||||| |||||||| |||||||| | ||| || || || ||||| ||||| ||| | || Sbjct 539 ACAAACCATGCATGTCATTGATTCTTATGGATCACTAACTGTTGGGTATCACGTGCTCAA 598 Query 2411 AGCAGGGACAGTGAATCAACTTATACAATTTGCTTCTAATGATTTGCAGAGTGAAAT 2467 || || || || ||||| | || |||||||| || |||||| |||| || || || Sbjct 599 GGCCGGAACTGTCAATCATTTAATTCAATTTGCCTCAAATGATCTGCAAAGCGAGAT 655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30896002365904