Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_008393.1 Length=9890 Score E Sequences producing significant alignments: (Bits) Value seq33068 84.2 1e-12 >seq33068 Length=655 Score = 84.2 bits (92), Expect = 1e-12 Identities = 267/409 (65%), Gaps = 10/409 (2%) Strand=Plus/Plus Query 1929 TGCTGTTGTGTAACATTGGATGATGGAACTGCAATCGAATCCACATTTTACCCACCGACT 1988 || || |||||||| ||||||||||||| | || | ||| || | ||||| Sbjct 174 TGTTGCTGTGTAACGATGGATGATGGAACCCCGATGTACTCCGAGCTTAAGAGCCCGACG 233 Query 1989 AAGAAACATCTGGTGATAGGAAGCAGTGGAGACCAGAAGTTTGTTGATCTTCCAAAGGGT 2048 |||| ||||| || |||||| ||| || | |||| ||||||| ||| | Sbjct 234 AAGAGGCATCTAGTTATAGGAGCTTCTGGTGATCCAAAGTACATTGATCTGCCAGCATCT 293 Query 2049 GAAACAACAATGCTGTACATAGCACGTCAAGGTTATTGTTACATCAACTTGTACCTAGCT 2108 || || | |||| |||||| |||||||||| || |||| | | ||| || Sbjct 294 GAGGCAGAACGTATGTATATAGCAAAGGAAGGTTATTGCTATCTCAATATTTTCCTCGCA 353 Query 2109 ATGTTGATTAACATTAAGGAAGAAGACGCCAAGGATTTCACTAAGAAGGTCAGAGACATG 2168 ||| | | || |||| || | || || ||||||||||| || | | | | || | Sbjct 354 ATGCTTGTAAATGTTAATGAGAACGAAGCAAAGGATTTCACCAAAATGATTCGTGATGTT 413 Query 2169 TGTGTCCCTAAATTAGGAAAGTGGCCTACATTAATGGATGTCGCCAC--CA-CTTGTGCT 2225 | |||| | | || |||||||| |||| |||||||| || || || | | | | Sbjct 414 TTGATCCCCATGCTTGGGCAGTGGCCTTCATTGATGGATGTTGCAACTGCAGCATATATT 473 Query 2226 CAATTGAGAATATTCTATCCAGATGTACATGAT--GCAGAATTACCAAGAATTCTGATTG 2283 | | | ||||| |||| || || ||| || |||||||| || || || ||| Sbjct 474 C---TAGGCGTATTCCATCCTGA--AACGCGATGCGCTGAATTACCCAGGATCCTTGTTG 528 Query 2284 ATCATAATACACAAACTTGCCATGTCGTGGATTCTTTTGGCTCACAAAC 2332 | || ||||||||| |||||| | ||||||| ||| |||| ||| Sbjct 529 ACCACGCTACACAAACCATGCATGTCATTGATTCTTATGGATCACTAAC 577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31519744001824