Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_009742.1 Length=9689 Score E Sequences producing significant alignments: (Bits) Value seq33068 336 1e-88 >seq33068 Length=655 Score = 336 bits (372), Expect = 1e-88 Identities = 406/547 (74%), Gaps = 4/547 (1%) Strand=Plus/Plus Query 1938 GGTGAAAGTATTGAGAGAGAA-CCATTGACATCTTCTTGTGTCTCTAAACTTGATGGGAA 1996 || || || ||||||| |||| ||| | ||||| | |||||||| ||| |||| || Sbjct 102 GGAGAGAGCATTGAGA-AGAAGCCACTCACATCAGCGTGTGTCTCCCAACAGAATGGAAA 160 Query 1997 TTTTGTTTATCCATGCTGTTGTGTCACGCATGATGATGGAAAAGCATTACATTCAGAGCT 2056 || | | | |||| || ||||| ||| |||||||||| | | | || ||||| Sbjct 161 TTATATACACTCATGTTGCTGTGTAACGATGGATGATGGAACCCCGATGTACTCCGAGCT 220 Query 2057 CAAAAGCCCCACTAAGAGGCACCTGGTAGTTGGTGCATCAGGAGATCCAAAGTACATTGA 2116 || ||||| || |||||||| || || | || || || || ||||||||||||||||| Sbjct 221 TAAGAGCCCGACGAAGAGGCATCTAGTTATAGGAGCTTCTGGTGATCCAAAGTACATTGA 280 Query 2117 CTTGCCGGCGAGCGATTCAGACAGAATGTATATAGCAAAGGAAGGATATTGTTATCTCAA 2176 |||| || || |||| | |||||||||||||||||||| ||||| |||||||| Sbjct 281 TCTGCCAGCATCTGAGGCAGAACGTATGTATATAGCAAAGGAAGGTTATTGCTATCTCAA 340 Query 2177 TATCTTTCTGGCTATGCTGGTGAATGTTGATGAGAATGATGCCAAAGATTTCACAAAAAT 2236 ||| || || || ||||| || |||||| ||||||| || || || |||||||| ||||| Sbjct 341 TATTTTCCTCGCAATGCTTGTAAATGTTAATGAGAACGAAGCAAAGGATTTCACCAAAAT 400 Query 2237 GGTTAGGGATGTGATCGTGCCAATGC-TGGGCACATGGCCTACAATGACTGATGTTGCAG 2295 | || | ||||| | | || |||| |||||| |||||| || ||| ||||||||| Sbjct 401 GATTCGTGATGTTTTGATCCCCATGCTTGGGCA-GTGGCCTTCATTGATGGATGTTGCAA 459 Query 2296 CAGCAGCATACATCTTGGTTATTTTCCATCCAGCAACAAGAAATGCAGAACTACCAAGAA 2355 | |||||||| || | | | |||||||| | ||| || || ||| |||| || | Sbjct 460 CTGCAGCATATATTCTAGGCGTATTCCATCCTGAAACGCGATGCGCTGAATTACCCAGGA 519 Query 2356 TACTTGTTGATCATAAGACACAAACAATGCATGTCATTGACTCTTTCGGCTCACTCACAA 2415 | |||||||| || |||||||| |||||||||||||| |||| || ||||| || Sbjct 520 TCCTTGTTGACCACGCTACACAAACCATGCATGTCATTGATTCTTATGGATCACTAACTG 579 Query 2416 CAGGATATCATGTCCTAAAGGCTGGCACTGTTAATCAATTGCTTCAATTTGCTTCAAATG 2475 || ||||| || || ||||| || ||||| ||||| || |||||||||| ||||||| Sbjct 580 TTGGGTATCACGTGCTCAAGGCCGGAACTGTCAATCATTTAATTCAATTTGCCTCAAATG 639 Query 2476 ACCTGCA 2482 | ||||| Sbjct 640 ATCTGCA 646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30876810315568