Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_009745.1 Length=9711 Score E Sequences producing significant alignments: (Bits) Value seq33068 111 1e-20 >seq33068 Length=655 Score = 111 bits (122), Expect = 1e-20 Identities = 325/494 (66%), Gaps = 20/494 (4%) Strand=Plus/Plus Query 1984 CATGTTGTTGCGTAACGAATGATGTCGGAGAACCAATATATTCACAGTATCGAAGCCCAT 2043 ||||||| || ||||||| |||| ||| || || || || || | ||||| Sbjct 172 CATGTTGCTGTGTAACGATGGATGATGGAACCCCGATGTACTCCGAGCTTAAGAGCCCGA 231 Query 2044 CTGCAAGACACATAATTATAGGCACATCTGGGGATCCAAAGATAATTAAAATGCCACAGA 2103 | || || || ||||||| | ||||| ||||||||| ||| | ||||| Sbjct 232 CGAAGAGGCATCTAGTTATAGGAGCTTCTGGTGATCCAAAGTACATTGATCTGCCAGCAT 291 Query 2104 CTGTGA-ACAATGCTATGTATATAGCAAAACCTGGGTATTGCTATTTAAATATCTTTTTG 2162 ||| | | || | ||||||||||||||| || ||||||||| | ||||| || | Sbjct 292 CTGAGGCAGAACG-TATGTATATAGCAAAGGAAGGTTATTGCTATCTCAATATTTTCCTC 350 Query 2163 GCGATGCTACTGAACGTCGATGATGAAAGTGCCAAAGAATTT-ACAGTTCTGATTAAAGA 2221 || ||||| | || || |||| ||| | ||||| |||| || ||||| || Sbjct 351 GCAATGCTTGTAAATGTTAATGA-GAACGAAGCAAAGGATTTCACCAAAATGATTCGTGA 409 Query 2222 TGAGTTTATACCTCAACTTGGAGAGTGGCCCACACTTACACGTTTAGCATCGGTTTGTTA 2281 || || || || ||||| ||||||| || | | | | ||| | | Sbjct 410 TGTTTTGATCCCCATGCTTGGGCAGTGGCCTTCATTGATGGATGTTGCAACTG------- 462 Query 2282 CACCATATCTT-------TATTTTATCCAAAGACTGCTAAT-GCTGAGCTCCCACGCATT 2333 || ||||| || |||| |||| | || || | ||||| | || | || Sbjct 463 CAGCATATATTCTAGGCGTATTCCATCCTGAAAC-GCGATGCGCTGAATTACCCAGGATC 521 Query 2334 CTTGTTGATCACGCGAACAAAACGATGCATGTCATTGATTCGTATGGGTCAGTGACAACT 2393 |||||||| ||||| | |||| ||||||||||||||||| ||||| ||| | || | Sbjct 522 CTTGTTGACCACGCTACACAAACCATGCATGTCATTGATTCTTATGGATCACTAACTGTT 581 Query 2394 GGGTATCATATACTTAAGGCTGGGACTGTTAAGCAACTTATTGACTTTTCATCAAATGAA 2453 |||||||| | || ||||| || ||||| || || | ||| | ||| | |||||||| Sbjct 582 GGGTATCACGTGCTCAAGGCCGGAACTGTCAATCATTTAATTCAATTTGCCTCAAATGAT 641 Query 2454 TTGCAGAGTGAGAT 2467 |||| || ||||| Sbjct 642 CTGCAAAGCGAGAT 655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30947181166800