Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_010735.1 Length=9742 Score E Sequences producing significant alignments: (Bits) Value seq33068 136 2e-28 >seq33068 Length=655 Score = 136 bits (150), Expect = 2e-28 Identities = 309/451 (69%), Gaps = 24/451 (5%) Strand=Plus/Plus Query 1855 CATGTTGTTGTGTTACGTTGGATGATGGAAGTGCTATGAAGTCAACCATCT--ACCCACC 1912 ||||||| ||||| ||| |||||||||||| | ||| | || | | || | || Sbjct 172 CATGTTGCTGTGTAACGATGGATGATGGAACCCCGATGTACTC--CGAGCTTAAGAGCCC 229 Query 1913 TACAAAGAAGCATCTAGTGATCGGAAATACGGGTGACGCAAAATACGTTGATTTACCTAA 1972 || |||| ||||||||| || ||| | | ||||| |||| ||| ||||| | || Sbjct 230 GACGAAGAGGCATCTAGTTATAGGAGCTTCTGGTGATCCAAAGTACATTGATCTGCCAGC 289 Query 1973 GGGTGATTCTGGAATGT-TATACATTGCAAAAGAAGGGTATTGCTACATAAACATATACC 2031 ||| | ||| || | || || ||||| ||||| |||||||| | || || | || Sbjct 290 ATCTGAGGC-AGAACGTATGTATATAGCAAAGGAAGGTTATTGCTATCTCAATATTTTCC 348 Query 2032 TAGCAATGTTAATCAACGTTAAAGAAGATGATGCAAAAGACTTCACTAAAAAGGTCAGAG 2091 | |||||| | | || ||||| || | || ||||| || ||||| |||| | | | | Sbjct 349 TCGCAATGCTTGTAAATGTTAATGAGAACGAAGCAAAGGATTTCACCAAAATGATTCGTG 408 Query 2092 ACATCTGTGTGCCAAAACTTGGGAAATGGCCATCAGTGATGGATGTCGCAACAACGTGC- 2150 | | | | || | |||||| | ||||| ||| |||||||||| ||||| ||| Sbjct 409 ATGTTTTGATCCCCATGCTTGGGCAGTGGCCTTCATTGATGGATGTTGCAAC----TGCA 464 Query 2151 GCACA-ATT----GCGGATCTTCTATCCCGACGTGCACGAT--GCTGAACTACCAAGAAT 2203 ||| | ||| ||| | ||| |||| || | |||| |||||| |||| || || Sbjct 465 GCATATATTCTAGGCG--TATTCCATCCTGA--AACGCGATGCGCTGAATTACCCAGGAT 520 Query 2204 TCTTGTCGACCACACAACGCAAA-CATGTCACGTGATTGATTCATTTGGATCTATTACAA 2262 ||||| |||||| | || |||| |||| || || |||||||| | |||||| | || Sbjct 521 CCTTGTTGACCACGCTACACAAACCATG-CATGTCATTGATTCTTATGGATCACTAACTG 579 Query 2263 CTGGATTTCATGTTTTGAAGGCTGCAACTGT 2293 ||| | ||| || | ||||| | |||||| Sbjct 580 TTGGGTATCACGTGCTCAAGGCCGGAACTGT 610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31046340093536