Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_011560.1 Length=9973 Score E Sequences producing significant alignments: (Bits) Value seq33068 239 3e-59 >seq33068 Length=655 Score = 239 bits (264), Expect = 3e-59 Identities = 385/551 (70%), Gaps = 2/551 (0%) Strand=Plus/Plus Query 2094 AGAGTGTTGATAAGAAACCACTCACACAAGCATGCACATCAAAGCAAGATGGAAATTTCG 2153 |||| |||| ||||| ||||||||| ||| || || | || ||||||||| Sbjct 106 AGAGCATTGAGAAGAAGCCACTCACATCAGCGTGTGTCTCCCAACAGAATGGAAATTATA 165 Query 2154 TATATGCATGCTGTTGCGTCACGCAGGAGGATGGCACGCCAGTGTACTCTGAACTCAAAA 2213 || | |||| || || || ||| ||| ||||| || || ||||||| || || || | Sbjct 166 TACACTCATGTTGCTGTGTAACGATGGATGATGGAACCCCGATGTACTCCGAGCTTAAGA 225 Query 2214 GTCCAACAAAACGCCATTTAGTAGTTGGAACCTCAGGTGAGCCGAAGTTCATTGATCTGC 2273 | || || || | ||| |||| | ||| | || ||||| || |||| ||||||||||| Sbjct 226 GCCCGACGAAGAGGCATCTAGTTATAGGAGCTTCTGGTGATCCAAAGTACATTGATCTGC 285 Query 2274 CCACATCTGATGATGAGCCAATGTACATAGCACGGGAGGGTTACTGTTATTTGAATATAT 2333 | ||||||| | || | ||||| |||||| ||| ||||| || ||| | ||||| | Sbjct 286 CAGCATCTGAGGCAGAACGTATGTATATAGCAAAGGAAGGTTATTGCTATCTCAATATTT 345 Query 2334 TCTTGGCTATGCTCGTGAATGTAAATGAAGGTGATGCCAAGGAATTCACCAAAATGGTAC 2393 || | || ||||| || ||||| ||||| || || ||||| |||||||||||| | | Sbjct 346 TCCTCGCAATGCTTGTAAATGTTAATGAGAACGAAGCAAAGGATTTCACCAAAATGATTC 405 Query 2394 GTGATGTGCTCATACCTCTTCTTGGTACTTGGCCAAAATTAACAGATCTGGCCACAGCAG 2453 ||||||| | || || | ||||| ||||| ||| | ||| | || || |||| Sbjct 406 GTGATGTTTTGATCCCCATGCTTGGGCAGTGGCCTTCATTGATGGATGTTGCAACTGCAG 465 Query 2454 TCTACATCTTAACGGTCTTCCATCCGGAGACCAGAAGCGCTGAGTTACCAAGAATTCTGG 2513 || || || || |||||||| || || || ||||||| ||||| || || || | Sbjct 466 CATATATTCTAGGCGTATTCCATCCTGAAACGCGATGCGCTGAATTACCCAGGATCCTTG 525 Query 2514 TGGACCATG-AACATCAAACAATGCACGTAATTGACTCTTTTGGTTCATTGAGCACAGGA 2572 | ||||| | ||| ||||| ||||| || ||||| |||| ||| ||| | | || Sbjct 526 TTGACCACGCTACA-CAAACCATGCATGTCATTGATTCTTATGGATCACTAACTGTTGGG 584 Query 2573 TACCATGTTCTCAAAACAGGAACAGTAAGCCAGTTGATACATTTTGGGGCAGATGATCTA 2632 || || || ||||| | ||||| || | || || || || |||| || ||||||| Sbjct 585 TATCACGTGCTCAAGGCCGGAACTGTCAATCATTTAATTCAATTTGCCTCAAATGATCTG 644 Query 2633 GTGAGCGAGAT 2643 |||||||| Sbjct 645 CAAAGCGAGAT 655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31785234031472