Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_011918.1 Length=9792 Score E Sequences producing significant alignments: (Bits) Value seq33068 125 4e-25 >seq33068 Length=655 Score = 125 bits (138), Expect = 4e-25 Identities = 419/631 (66%), Gaps = 26/631 (4%) Strand=Plus/Plus Query 1794 AAGTACGTAATTCGCAAATTTCCAAATGGTTCAAGAAAGCTGGCTATTGGTAATTTAATT 1853 ||||||||| | || || |||||||||||| | | ||| |||| || || || ||| Sbjct 3 AAGTACGTAGTGCGAAACTTTCCAAATGGTACTCGTAAGTTGGCCATAGGCTCATTGATT 62 Query 1854 CTCTCCACG-AACTTGGAT-GAACTTAGAAAGCAGCTCCAAGGAGAGAGTATTCAAACAT 1911 | |||| || |||||| | | | ||| || | |||||||| ||| | | Sbjct 63 GTA-CCACTCAATTTGGATAGGGCACGCACTGCA-CTACTTGGAGAGAGCATTGAGAAGA 120 Query 1912 ATCCTTTGAC-TCAGCAGTGTGTAAGCAAGAGGAATGAGACATT-TATTTATCCATGCTG 1969 | || | || ||||| |||||| | | ||||| || ||| ||| | |||| || Sbjct 121 AGCCACTCACATCAGC-GTGTGTCTCCCAACAGAATG-GAAATTATATACACTCATGTTG 178 Query 1970 CTGTGTCACATATGATGATGGAAGCCCAATGCTCTCTGAATATAA-AGCTCCAACAAAGA 2028 |||||| || |||||||||| ||| ||| ||| || ||| ||| || || |||| Sbjct 179 CTGTGTAACGATGGATGATGGAACCCCGATGTACTCCGAGCTTAAGAGC-CCGACGAAGA 237 Query 2029 ATCATTTAGTTCTTGGTAATTCAGGAGATTTTAAATATCTTGATCTACCGACA---GAGA 2085 ||| ||||| | || ||| || ||| || || ||||||| || || ||| Sbjct 238 GGCATCTAGTTATAGGAGCTTCTGGTGATCCAAAGTACATTGATCTGCCAGCATCTGAGG 297 Query 2086 TAAGTGAAAATTTGTACATAGCAAAGGAAGGCTACTGTTACATCAATATTTTCTTATCAA 2145 | ||| | |||| |||||||||||||| || || || ||||||||||| | ||| Sbjct 298 CA---GAACGTATGTATATAGCAAAGGAAGGTTATTGCTATCTCAATATTTTCCTCGCAA 354 Query 2146 TGTTGGTTGAAGTCGATGAAAATGAAGCCAAGGACTATACTAAGTGGGTCAGAGACATAG 2205 || | || | || |||| || ||||| ||||| | || || | | | || | Sbjct 355 TGCTTGTAAATGTTAATGAGAACGAAGCAAAGGATTTCACCAAAATGATTCGTGATGTTT 414 Query 2206 TGGTGCAGCAACTCGGACAGTGGCCGACAATGACTGATGTGGCTTTAGCTTGCTACCAGC 2265 || | | || || |||||||| || ||| ||||| || | | ||| | || Sbjct 415 TGATCCCCATGCTTGGGCAGTGGCCTTCATTGATGGATGTTGC---AAC-TGC-AGCATA 469 Query 2266 TCTCAGTGTTGT-TTCCATC--GACACGC--TCTGCTGAGCTACCCAGAATTTTAGTTGA 2320 | | | || ||||||| || |||| | ||||| ||||||| || | ||||| Sbjct 470 TATTCTAGGCGTATTCCATCCTGAAACGCGATGCGCTGAATTACCCAGGATCCTTGTTGA 529 Query 2321 CCACAAAACTAAAACGATGCATGTTATCGATTCATTTGGATCACTAACAACTGGGTACCA 2380 |||| || |||| |||||||| || ||||| | |||||||||||| |||||| || Sbjct 530 CCACGCTACACAAACCATGCATGTCATTGATTCTTATGGATCACTAACTGTTGGGTATCA 589 Query 2381 CATCCTCAAAGCTAACACTGTTAGTCAATTA 2411 | | ||||| || ||||| | ||| ||| Sbjct 590 CGTGCTCAAGGCCGGAACTGTCAATCATTTA 620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31206273846336