Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_014038.1 Length=9965 Score E Sequences producing significant alignments: (Bits) Value seq33068 118 7e-23 >seq33068 Length=655 Score = 118 bits (130), Expect = 7e-23 Identities = 259/381 (68%), Gaps = 14/381 (4%) Strand=Plus/Plus Query 2293 CCAACGAAGAAGCATATGGTGATTGGGAACAGTGGAGATCAAAAGTACGTTGATTTGCCA 2352 || ||||||| |||| | || || || ||| |||| ||||||| ||||| ||||| Sbjct 228 CCGACGAAGAGGCATCTAGTTATAGGAGCTTCTGGTGATCCAAAGTACATTGATCTGCCA 287 Query 2353 AAAGGAGATACGGAAATGTTGTATATAGCAAAAGAAGGATATTGTTATATTAACATTTAT 2412 | || | ||| ||||||||||||| ||||| ||||| ||| | || |||| Sbjct 288 GCATCTGAGGCAGAACGTATGTATATAGCAAAGGAAGGTTATTGCTATCTCAATATTTTC 347 Query 2413 TTGGCGATGCTTATCAACGTAAATGAAGAAGATGCAAAAGACTTCACCAAGAAAGTTCGT 2472 | || |||||| | || || ||||| | || ||||| || |||||||| | ||||| Sbjct 348 CTCGCAATGCTTGTAAATGTTAATGAGAACGAAGCAAAGGATTTCACCAAAATGATTCGT 407 Query 2473 GATCTGTGTGTCCCTAAACTTGGGAAGTGGCCAACTCTCATGGATTTAGCAACCACTTGC 2532 ||| | | |||| | |||||| ||||||| | | |||||| | ||||| ||| Sbjct 408 GATGTTTTGATCCCCATGCTTGGGCAGTGGCCTTCATTGATGGATGTTGCAAC----TGC 463 Query 2533 -GCACA-ATT----GCGAATTTTCTATCCTGATGTTC-ATGATGCTGAATTGCCAAGGAT 2585 ||| | ||| ||| | ||| ||||||| | ||| |||||||| || ||||| Sbjct 464 AGCATATATTCTAGGCG--TATTCCATCCTGAAACGCGATG-CGCTGAATTACCCAGGAT 520 Query 2586 ATTGGTGGATCACAACACACAAACTTGTCACGTTGTTGATTCATTCGGGTCTATAACGAC 2645 | || || ||| |||||||| || || ||||||| | || || |||| Sbjct 521 CCTTGTTGACCACGCTACACAAACCATGCATGTCATTGATTCTTATGGATCACTAACTGT 580 Query 2646 TGGATTTCACATTCTGAAGGC 2666 ||| | |||| | || ||||| Sbjct 581 TGGGTATCACGTGCTCAAGGC 601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31759644631024