Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_014252.1 Length=9750 Score E Sequences producing significant alignments: (Bits) Value seq33068 98.7 6e-17 >seq33068 Length=655 Score = 98.7 bits (108), Expect = 6e-17 Identities = 246/369 (67%), Gaps = 11/369 (3%) Strand=Plus/Plus Query 1959 CCAACAAAGAATCATTTAGTAATTGGTAACACAGGTGATTCCAAGTTTGTTGATTTACCA 2018 || || |||| ||| |||| || || | |||||| | |||| ||||| | ||| Sbjct 228 CCGACGAAGAGGCATCTAGTTATAGGAGCTTCTGGTGATCCAAAGTACATTGATCTGCCA 287 Query 2019 GCGGAAGAGCAAGAGGGTTTGTACATAGCGAAAGATGGATATTGCTATGTTAACATTTTC 2078 || ||| ||| || |||| ||||| || || || ||||||||| | || |||||| Sbjct 288 GCATCTGAGGCAGAACGTATGTATATAGCAAAGGAAGGTTATTGCTATCTCAATATTTTC 347 Query 2079 TTAGCTATGCTTGTGAACGTGAATGAAGTCGGAGCCAAAGACTTCACAAAGATGGTCAGG 2138 | || |||||||| || || ||||| || ||| || || ||||| || ||| | | Sbjct 348 CTCGCAATGCTTGTAAATGTTAATGAGAACGAAGCAAAGGATTTCACCAAAATGATTCGT 407 Query 2139 GATTTGGTAATTGAAAATGAGCTTGGAAAGTGGCCAACCCTGATGGACGTAGCAACAGCT 2198 ||| | | || | |||||| ||||||| | ||||||| || ||||| || Sbjct 408 GATGTTTTGATCCCCAT---GCTTGGGCAGTGGCCTTCATTGATGGATGTTGCAACTGCA 464 Query 2199 TGTCATTTATT--AACAGTATTCCATCCTGAGACAAGCAAT--GCTGAGTTGCCACGCAT 2254 ||| |||| | |||||||||||||| || || || ||||| || || | || Sbjct 465 G--CATATATTCTAGGCGTATTCCATCCTGAAAC--GCGATGCGCTGAATTACCCAGGAT 520 Query 2255 TTTGGTCGATCATAATTTAAAGACGATGCACGTCATAGACTCGTATGGCTCTAAAACAAC 2314 | || || || | | | || ||||| ||||| || || ||||| || ||| Sbjct 521 CCTTGTTGACCACGCTACACAAACCATGCATGTCATTGATTCTTATGGATCACTAACTGT 580 Query 2315 AGGGTATCA 2323 |||||||| Sbjct 581 TGGGTATCA 589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31071929493984