Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_014536.1 Length=9870 Score E Sequences producing significant alignments: (Bits) Value seq33068 82.4 5e-12 >seq33068 Length=655 Score = 82.4 bits (90), Expect = 5e-12 Identities = 161/239 (67%), Gaps = 12/239 (5%) Strand=Plus/Plus Query 2006 CCAACCAAAAAGCACTTGGTAATTGGAACAACAGGGGATCAAAAGTACGTGGATCTACCA 2065 || || || | ||| | || || ||| | | || |||| ||||||| | ||||| ||| Sbjct 228 CCGACGAAGAGGCATCTAGTTATAGGAGCTTCTGGTGATCCAAAGTACATTGATCTGCCA 287 Query 2066 AAGGGAGAATCTGAGTC------TTTATACATAGCAAAGGATGGTTATTGCTACATAAAT 2119 | ||||||| | | | || ||||||||||| ||||||||||| | ||| Sbjct 288 ------GCATCTGAGGCAGAACGTATGTATATAGCAAAGGAAGGTTATTGCTATCTCAAT 341 Query 2120 TTGTTTCTAGCTATGTTAATAAACATCAGGGAGGAGGATGCAAAAGACTTCACCAAAAAG 2179 | || || || ||| | |||| | | ||| | || ||||| || |||||||||| | Sbjct 342 ATTTTCCTCGCAATGCTTGTAAATGTTAATGAGAACGAAGCAAAGGATTTCACCAAAATG 401 Query 2180 GTCAGAGATTTGATTATACCCAGACTTGGTAAGTGGCCAACACTCCTTGATGTGGCAAC 2238 | | ||| | | || |||| ||||| ||||||| || | | ||||| ||||| Sbjct 402 ATTCGTGATGTTTTGATCCCCATGCTTGGGCAGTGGCCTTCATTGATGGATGTTGCAAC 460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31455770500704