Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_017970.1 Length=10731 Score E Sequences producing significant alignments: (Bits) Value seq33068 208 5e-50 >seq33068 Length=655 Score = 208 bits (230), Expect = 5e-50 Identities = 336/478 (70%), Gaps = 10/478 (2%) Strand=Plus/Plus Query 2827 GGAAATTTTGTTTATCCTTGTTGTTGCGTCACTATGGATGATGGTACACCTATCGAATCT 2886 ||||||| | | | | ||||| || || || ||||||||||| || || || | || Sbjct 156 GGAAATTATATACACTCATGTTGCTGTGTAACGATGGATGATGGAACCCCGATGTACTCC 215 Query 2887 GAATTCAAATTACCAACCAAAAATCATCTGGTTATTGGAAACTCAGGTGATCCCAAGTAT 2946 || | || || || || | ||||| ||||| ||| || |||||||| ||||| Sbjct 216 GAGCTTAAGAGCCCGACGAAGAGGCATCTAGTTATAGGAGCTTCTGGTGATCCAAAGTAC 275 Query 2947 GTTGATATGCCACCTGAAGTGGACAAAAAG-ATGTATATAGCAAAAGAAGGTTATTGCTA 3005 ||||| ||||| | | || || || | |||||||||||||| |||||||||||||| Sbjct 276 ATTGATCTGCCAGCATCTGAGG-CAGAACGTATGTATATAGCAAAGGAAGGTTATTGCTA 334 Query 3006 TGTCAACATATTCTTAGCGATGCTTGTTAATATCAATGAGAGTGATGCTAAAGATTTTAC 3065 | |||| || ||| | || |||||||| ||| | ||||||| || || || ||||| || Sbjct 335 TCTCAATATTTTCCTCGCAATGCTTGTAAATGTTAATGAGAACGAAGCAAAGGATTTCAC 394 Query 3066 CAAACAAGTTCGAGACATCTTGATGGAAAAACTTGGCAAGTGGCCCTCGATGTACGACGT 3125 |||| |||| || | ||||| | ||||| ||||||| || || || || Sbjct 395 CAAAATGATTCGTGATGTTTTGATCCCCATGCTTGGGCAGTGGCCTTCATTGATGGATGT 454 Query 3126 TGCAACTGCATGTGCTTGGATATCAA----TTTTCTATCCTGAAACAAGGAATGCTGAAT 3181 |||||||||| || | || || | | ||| |||||||||| | ||||||| Sbjct 455 TGCAACTGCA---GCATATAT-TCTAGGCGTATTCCATCCTGAAACGCGATGCGCTGAAT 510 Query 3182 TACCAAGGATATTAGTTGATCACAATACCAAGACCATGCATGTGATTGATTCGTTTGGGT 3241 |||| ||||| | ||||| ||| ||| | ||||||||||| |||||||| | ||| | Sbjct 511 TACCCAGGATCCTTGTTGACCACGCTACACAAACCATGCATGTCATTGATTCTTATGGAT 570 Query 3242 CGTTAACTACAGGGTACCATGTGCTGAAAGCGAACACAGTTAGTCAACTGATTCAATT 3299 | ||||| ||||| || ||||| || || || || | ||| | |||||||| Sbjct 571 CACTAACTGTTGGGTATCACGTGCTCAAGGCCGGAACTGTCAATCATTTAATTCAATT 628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34209829723920