Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_021065.1 Length=9718 Score E Sequences producing significant alignments: (Bits) Value seq33068 120 2e-23 >seq33068 Length=655 Score = 120 bits (132), Expect = 2e-23 Identities = 295/439 (67%), Gaps = 10/439 (2%) Strand=Plus/Plus Query 2120 TGCTGTTGTGTCACACTTGACGATGGAAAGCCACTGTTGTCAGACCTCAAGCTCCCAACG 2179 || || ||||| || | || ||||||| || ||| || || || ||| ||| ||| Sbjct 174 TGTTGCTGTGTAACGATGGATGATGGAACCCCGATGTACTCCGAGCTTAAGAGCCCGACG 233 Query 2180 AAGCGACACCTTGTAGTAGGTAATACAGGGGACTCAAAATTCATCGATTTGCCATCTGAC 2239 ||| | || || || |||| | | || || |||| | ||| ||| ||||| | | Sbjct 234 AAGAGGCATCTAGTTATAGGAGCTTCTGGTGATCCAAAGTACATTGATCTGCCAGC--AT 291 Query 2240 CTTGGTGAGAAA--ATGTACATTGCAAAGGATGGATATTGTTATCTCAACATATTCCTCG 2297 || | |||| ||||| || |||||||| || ||||| |||||||| || ||||||| Sbjct 292 CTGAGGCAGAACGTATGTATATAGCAAAGGAAGGTTATTGCTATCTCAATATTTTCCTCG 351 Query 2298 CAATGTTAGTGAATGTAAATGAGGGAGATGCTAAAAGCTTCACCAAATTTGTGCGTGACA 2357 ||||| | || ||||| |||||| || || || ||||||||| | | ||||| Sbjct 352 CAATGCTTGTAAATGTTAATGAGAACGAAGCAAAGGATTTCACCAAAATGATTCGTGATG 411 Query 2358 TATTGGTTGAGAAACTTGGCACATGGCCCTCGATGATGGACGTAGCAACAGCGTGCA-GG 2416 | ||| | | ||||| ||||| || ||||||| || ||||| || ||| Sbjct 412 TTTTGATCCCCATGCTTGGGCAGTGGCCTTCATTGATGGATGTTGCAACTGC-AGCATAT 470 Query 2417 ATGCTTATTGTGTTGTATCCT--AACGTCTATAATGCAGAAATCCCTCGGATACTAGTCG 2474 || || || || ||||| |||| | || || ||| | || |||| || || | Sbjct 471 ATTCTAGGCGTATTCCATCCTGAAACG-CGAT-GCGCTGAATTACCCAGGATCCTTGTTG 528 Query 2475 ATCACAAGACAAAGACAATGCATGTGCTAGATTCGTATGGATCATTGAGTACGGGTTATC 2534 | ||| ||| | || |||||||| | ||||| ||||||||| | | | || |||| Sbjct 529 ACCACGCTACACAAACCATGCATGTCATTGATTCTTATGGATCACTAACTGTTGGGTATC 588 Query 2535 ACATCTTGAAAGCAGGAAC 2553 || | | || || ||||| Sbjct 589 ACGTGCTCAAGGCCGGAAC 607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30969571892192