Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_029051.1 Length=9590 Score E Sequences producing significant alignments: (Bits) Value seq33068 158 7e-35 >seq33068 Length=655 Score = 158 bits (174), Expect = 7e-35 Identities = 275/393 (70%), Gaps = 8/393 (2%) Strand=Plus/Plus Query 1965 TAGTAATTGGGAATTCTGGTGATCCGAAGTTCATTGATTTACCAAACCCCTTAAAGCAGG 2024 |||| || || |||||||||||| |||| ||||||| | ||| | | | |||| Sbjct 244 TAGTTATAGGAGCTTCTGGTGATCCAAAGTACATTGATCTGCCAGCATC--TGAGGCAGA 301 Query 2025 GGTTAT--ACATTGCAAAGGAAGGTTATTGTTACATCAATATATTCCTAGCAATGTATGT 2082 ||| | || ||||||||||||||||| || ||||||| ||||| |||||| ||| Sbjct 302 ACGTATGTATATAGCAAAGGAAGGTTATTGCTATCTCAATATTTTCCTCGCAATGCTTGT 361 Query 2083 GAATATTAATGAACAAGATGCGAAGGACTTCA-CAAAGCGATTGAGGGACATTGTCATCG 2141 ||| ||||||| | || || ||||| |||| |||| |||| | || || | ||| Sbjct 362 AAATGTTAATGAGAACGAAGCAAAGGATTTCACCAAAATGATT-CGTGATGTTTTGATCC 420 Query 2142 CACAGTTAGGAATGTGGCCATCAATGATGGATGTAGCCACAGCATGTTATATGATGACAG 2201 | | | || |||||| ||| |||||||||| || || ||| ||||| | | Sbjct 421 CCATGCTTGGGCAGTGGCCTTCATTGATGGATGTTGCAACTGCAGCATATATTCTAGGCG 480 Query 2202 TGCTATATCCAGAAGCTGGCAACGCTGAGTTACCGCGGATTTTGGTTGATCACACGTGCA 2261 | | |||| ||| | | |||||| ||||| |||| | ||||| ||| | | || Sbjct 481 TATTCCATCCTGAAACGCGATGCGCTGAATTACCCAGGATCCTTGTTGACCACGC-TACA 539 Query 2262 -AGACCATGCATGTAATTGATTCGTACGGGTCATTGTCGACTGGTTACCATGTGTTGAAA 2320 | ||||||||||| |||||||| || || ||| | | ||| || || ||| | || Sbjct 540 CAAACCATGCATGTCATTGATTCTTATGGATCACTAACTGTTGGGTATCACGTGCTCAAG 599 Query 2321 GCCAACACAGTCAATCAACTAATTCAATTTGCC 2353 ||| || |||||||| |||||||||||||| Sbjct 600 GCCGGAACTGTCAATCATTTAATTCAATTTGCC 632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30560141485024