Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_030236.1 Length=9622 Score E Sequences producing significant alignments: (Bits) Value seq33068 232 4e-57 >seq33068 Length=655 Score = 232 bits (256), Expect = 4e-57 Identities = 418/610 (69%), Gaps = 16/610 (3%) Strand=Plus/Plus Query 1787 TTGGCAATTGGCGCTCTCATTGTTCCTCTAAGTTTGGAAAGGGCACGAATTGCACTGCAA 1846 ||||| || ||| | | ||||| || || | |||||| |||||||| | |||||| | Sbjct 42 TTGGCCATAGGCTCATTGATTGTACCACTCAATTTGGATAGGGCACGCACTGCACTACTT 101 Query 1847 GG-----GCATTCAATACAAAGATTACCGTTAACAGTTTCCTGCACCTCGAAACAAGATG 1901 || ||||| | | || || | ||| | || ||| |||| ||| Sbjct 102 GGAGAGAGCATTGAGAAGAAG-----CCACTCACATCAGCGTGTGTCTCCCAACAGAATG 156 Query 1902 GAAATTTTGCATACCCATGCTGCTGCGTTACATTAGATAACGGTACACCATTGTATTCCG 1961 |||||| | | || |||| ||||| || || | ||| | || || || |||| |||| Sbjct 157 GAAATTATATACACTCATGTTGCTGTGTAACGATGGATGATGGAACCCCGATGTACTCCG 216 Query 1962 AACTTCGAAGTCCTACTAAGCGTCATTTGGTAGTCGGTGGAACTGGTGAGCCTAAGTATA 2021 | ||| || || || ||| | ||| | || | || | ||||||| || ||||| | Sbjct 217 AGCTTAAGAGCCCGACGAAGAGGCATCTAGTTATAGGAGCTTCTGGTGATCCAAAGTACA 276 Query 2022 TAGATTTACCAGCTGCAGATAGTGAGAGGATGTATATAGCAAAGAATGGATATTGTTATC 2081 | ||| | ||||| | || || | ||||||||||||||| | || ||||| |||| Sbjct 277 TTGATCTGCCAGCATCTGAGGCAGAACGTATGTATATAGCAAAGGAAGGTTATTGCTATC 336 Query 2082 TAAATATTTTTCTAGCCATGCTTGTAAATGTTAATGAAAGTGAAGCCAAAAACTTTACGA 2141 | |||||||| || || |||||||||||||||||||| | ||||| || | || || | Sbjct 337 TCAATATTTTCCTCGCAATGCTTGTAAATGTTAATGAGAACGAAGCAAAGGATTTCACCA 396 Query 2142 AGATGGTTAGAGATGTTATTATACCAATGCTTGGGGAATGGCCAACGATGCAAGACGTAG 2201 | ||| || | |||||| | || || ||||||||| | ||||| | || || || | Sbjct 397 AAATGATTCGTGATGTTTTGATCCCCATGCTTGGGCAGTGGCCTTCATTGATGGATGTTG 456 Query 2202 CTACTGCAACTTATATCCTGACAGTATTTCACCCTGAAACTCGAAATGCCGAATTGCCAC 2261 | |||||| | ||||| || ||||| || |||||||| ||| || ||||| || Sbjct 457 CAACTGCAGCATATATTCTAGGCGTATTCCATCCTGAAACGCGATGCGCTGAATTACCCA 516 Query 2262 GTATATTGGTGGACCA---TACATGTCAGACCATGCATGTAATCGATTCTTTTGGCTCCC 2318 | || | || ||||| |||| || ||||||||||| || ||||||| ||| || | Sbjct 517 GGATCCTTGTTGACCACGCTACA---CAAACCATGCATGTCATTGATTCTTATGGATCAC 573 Query 2319 TAACGACAGGGTATCATGTTCTTAAAGCAGGAACAATTAGTCAGTTGATAGGATTCGCTG 2378 |||| |||||||| || || || || ||||| | | ||| || || ||| || Sbjct 574 TAACTGTTGGGTATCACGTGCTCAAGGCCGGAACTGTCAATCATTTAATTCAATTTGCCT 633 Query 2379 GAAATGAACT 2388 |||||| || Sbjct 634 CAAATGATCT 643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30662499086816