Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_034208.1 Length=9555 Score E Sequences producing significant alignments: (Bits) Value seq33068 93.3 3e-15 >seq33068 Length=655 Score = 93.3 bits (102), Expect = 3e-15 Identities = 234/350 (67%), Gaps = 12/350 (3%) Strand=Plus/Plus Query 1891 CCAACTAAAAAGCATCTAGTTATTGGGAACAGTGGTGACCAGAAGTATGTCGATCTACCA 1950 || || || | |||||||||||| || |||||| | ||||| | ||||| ||| Sbjct 228 CCGACGAAGAGGCATCTAGTTATAGGAGCTTCTGGTGATCCAAAGTACATTGATCTGCCA 287 Query 1951 AAAGGAGAGTCCGAAATGTTGTACATAGCAAAACAGGGTTATTGTTACATCAATTTATAT 2010 | ||| | ||| |||| |||||||| | |||||||| || ||||| | | Sbjct 288 GCATCTGAGGCAGAACGTATGTATATAGCAAAGGAAGGTTATTGCTATCTCAATATTTTC 347 Query 2011 CTTGCTATGCTCATAAATGTTAACGAAGATGATGCCAAGGACTTTACCAAGAAAGTGCGT 2070 || || ||||| |||||||||| || | || || ||||| || ||||| | | ||| Sbjct 348 CTCGCAATGCTTGTAAATGTTAATGAGAACGAAGCAAAGGATTTCACCAAAATGATTCGT 407 Query 2071 GATTTGTGTGTTCCAAAACTTGGAAAATGGCCAACTCTTATGGATGTGGCTACTACCTGT 2130 ||| | | | || | ||||| | ||||| | | |||||||| || ||| | Sbjct 408 GATGTTTTGATCCCCATGCTTGGGCAGTGGCCTTCATTGATGGATGTTGCAACTGC---A 464 Query 2131 GCCCAACTTC---GCATCTTTTATCCTGACGTTCACGA--CGCAGAGTTACCGCGAATAT 2185 || | ||| || | || ||||||| | ||| ||| || ||||| | || Sbjct 465 GCATATATTCTAGGCGTATTCCATCCTGA--AACGCGATGCGCTGAATTACCCAGGATCC 522 Query 2186 TGGTTGACCACAAAACACAAA-CATGTCATGTCGTTGATTCATTTGGTTC 2234 | ||||||||| ||||||| |||| |||||| ||||||| | ||| || Sbjct 523 TTGTTGACCACGCTACACAAACCATG-CATGTCATTGATTCTTATGGATC 571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30448187858064