Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_028239.1 Length=16133 Score E Sequences producing significant alignments: (Bits) Value seq64892 100 3e-17 >seq64892 Length=10189 Score = 100 bits (110), Expect = 3e-17 Identities = 175/250 (70%), Gaps = 15/250 (6%) Strand=Plus/Minus Query 11302 TAAAGAGAGGGAATTGAAAGATGCTGGGAGGtttttttCATTAATGAGCTGGGAGCTGAG 11361 ||||||||| | | |||| ||| | |||| |||| |||||| |||||| |||| Sbjct 2203 TAAAGAGAGAGCAA-GAAATATG---GCTGGTTCTTTTATTTAATGTCCTGGGAAATGAG 2148 Query 11362 GGAGTACTTCGTATTTACTGAATACCTAATTAAAGAGCATTTTGTACCATTATTTAAGGG 11421 |||||||| ||| || || || |||||| | | |||||||| ||||||||||| Sbjct 2147 AGAGTACTTTGTAAAAACGGAGTATCTAATTGAGCAACATTTTGTCCCATTATTTAAATT 2088 Query 11422 TCTGACTATGGCTGATGACTTACAAACAGTTATTAAGAAGATGATAGATGTGTCTTCTGG 11481 | |||||||||||||| | || |||| |||| |||| |||| | | | Sbjct 2087 GGTTACTATGGCTGATGATATTGTGACCGTTACAAAGACGATGCTAGA---AAATAGTAG 2031 Query 11482 TCAAGGCACTGAGACATATGAGAATATCACCATTGCAAATAACATAGATTATGAGAAATG 11541 | || || || ||||| |||||| ||||||||| | ||||||||||| || || Sbjct 2030 T--AGCCA-----AC-TATGACTTTATCACGATTGCAAATCATATAGATTATGAAAAGTG 1979 Query 11542 GAATAATTAT 11551 ||||| ||| Sbjct 1978 AAATAACTAT 1969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 51434912493792